Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01877 ATGAGGACCCGTTTATCCTCGACTCGGGTCATCTTCGTGGCCTCGCTCTGTTTCCTCGCAAGCTTCGAATTATTGCAAGCCAAAACCATCGACCCCTACAAGGTTCTTGGGGTTGATAAAAATGCAAGTCAGCGGGAAATTCAGAAGGCTTTTCACAAGCTATCTCTTCAGTATCACCCTGACAAGAACAAAGCCAAGGGTGCACAAGAGAAGTTTTCTCAGATCAATAATGCATATGAACTTTTATCCGATGAAGAGAAGAGAAAGAATTATGACTTGTATGGAGATGAGAAAGGAAACCCTGGATTTCATGGTGGCCATCCTGGAGGTCAGGATGGATATACTTATTTTACAGGGGGTGGTCCTGGACAAAGCCATTTTAACTTCAAACCAGGGGGGGACTGGCAGGGTATGGGTGGTCAGGGAGGATCTAAGTCATTCTCCTTTTCTTTTGGCAGCTCGGGCAATTCCAATCCTTTTGGATTTGGCTTGGATGATCTTTTTGGCAGTTTTTTCGGTGGTGGAGGTGGTGGGAGTCAGTTTGGTGGTTTTGGCAGTTCAGCCAAGTCTGGGTCCAAGAGTTCTGCCAAAAGTCTTAGAGCTGTAAATTCACAGATTTACAAGAAAGAAATACAAAATGCAGGAATGACTTGGCTTTTGTTATCTTATATACCCTCATCGAAGGGGATCCAATACTTTGAATCCACTACAGAGGAGGTTGCCAGTTCATTGCAGGGAGCTTTGAAGGTTGGAAGCATAAACTGTGAAAAGGAAGTCTCATTCTGTAAGGAGCTTGGCATATATCCACGGAGAGCTCCTAGGCTTTTTGTTTTTTCTTATAAGGAGAATGAAAAAGGTTCTTTGGTGGAGTACAGTGGAGACTTGGATGCTAAGAATTTGAAGGCTTTCTGTCAAGAACACTTGCCAAGGTTTTCAAAACGAACCGACTTGAATCATCTTGATCAATTCAGCACTACTGGAAAGTTGCCTAGGGTGCTGCTTCTTTCCACCAAGAAGGACACTCCTGTAATTTGGCGTGTCCTTAGTGGCTTGTATCACAAACGCATTACTTTCAGTGATGCAGAGCTTCATGATGTTGCTGATCCTAGAGTGAAAACACTAGAAGTTGATGCACTTCCAGCTATAGTAGGTTGGCTACCAAATGGAGAAAAGCGTATCCTGAAAACTGGGATATCTGTGAAAGATTTAAAATCTGCAGTTCTTGATCTTAGTAACATACTTGATAGTTTTGAAAAAGTAAGTAAAAAGGAATCATCAGGTCAGGCCAAGAAGGCACAAACTGACTCAGACGAGGGACGCATACCATTACTTTCTAAATCAAACTTTGAGGCTCTATGTGGTGAGAAAACTCCAGTCTGCATAATTGGTGCCTTCAGATCTTCTAAAGCTAGAGAAAAGCTAGAATCAATCCTCTCTTTGGTCTCTCAAAAATCTTTGTCAAGACGACCAAGTCAGGGATCCAGCAGCTCTAGGGACTCCATTTTCTATGTTCTCTTAGATGCTGCGAAGCAAAAATCATTTCTAAAGGCATTTGACAAAACAGATTATAAATCATCAAATAATTTGTTGATTGCCTACAAACCTCGGAGAGGGAAGTATAGTGTATTTATGGGCGAAATGACAATAGAGGAGGCAGAGAAGTTCATTAGCTCCGTTCTCAGTGGAGATGTACCCTTCAGAGAAACAAGTAGGAAGCCTGTACTAGAGTATTag 1734 0.4227 MRTRLSSTRVIFVASLCFLASFELLQAKTIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKGAQEKFSQINNAYELLSDEEKRKNYDLYGDEKGNPGFHGGHPGGQDGYTYFTGGGPGQSHFNFKPGGDWQGMGGQGGSKSFSFSFGSSGNSNPFGFGLDDLFGSFFGGGGGGSQFGGFGSSAKSGSKSSAKSLRAVNSQIYKKEIQNAGMTWLLLSYIPSSKGIQYFESTTEEVASSLQGALKVGSINCEKEVSFCKELGIYPRRAPRLFVFSYKENEKGSLVEYSGDLDAKNLKAFCQEHLPRFSKRTDLNHLDQFSTTGKLPRVLLLSTKKDTPVIWRVLSGLYHKRITFSDAELHDVADPRVKTLEVDALPAIVGWLPNGEKRILKTGISVKDLKSAVLDLSNILDSFEKVSKKESSGQAKKAQTDSDEGRIPLLSKSNFEALCGEKTPVCIIGAFRSSKAREKLESILSLVSQKSLSRRPSQGSSSSRDSIFYVLLDAAKQKSFLKAFDKTDYKSSNNLLIAYKPRRGKYSVFMGEMTIEEAEKFISSVLSGDVPFRETSRKPVLEY 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01877 577 Coils Coil 65 85 - -
Gma18g01877 577 PANTHER DNAJ PROTEIN ERDJ3A 6 576 - -
Gma18g01877 577 SUPERFAMILY Chaperone J-domain 26 126 IPR036869 -
Gma18g01877 577 PRINTS DnaJ domain signature 33 51 IPR001623 -
Gma18g01877 577 PRINTS DnaJ domain signature 51 66 IPR001623 -
Gma18g01877 577 PRINTS DnaJ domain signature 67 87 IPR001623 -
Gma18g01877 577 PRINTS DnaJ domain signature 87 106 IPR001623 -
Gma18g01877 577 SMART dnaj_3 30 87 IPR001623 -
Gma18g01877 577 CDD DnaJ 31 84 IPR001623 -
Gma18g01877 577 Gene3D Glutaredoxin 195 315 - -
Gma18g01877 577 PANTHER DNAJ PROTEIN ERDJ3A 6 576 - -
Gma18g01877 577 SUPERFAMILY Thioredoxin-like 201 309 IPR036249 -
Gma18g01877 577 ProSiteProfiles dnaJ domain profile. 31 95 IPR001623 -
Gma18g01877 577 ProSitePatterns Nt-dnaJ domain signature. 72 91 IPR018253 -
Gma18g01877 577 Pfam DnaJ domain 31 92 IPR001623 -
Gma18g01877 577 Gene3D DnaJ domain 28 182 IPR036869 -
Gma18g01877 577 CDD PDI_a_family 238 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01877 Gma-Chr18 51675843 51679009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01877 33 94 C2H2 Transcription Factor Family AT1G74250 42.647 7.76e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01877 - - gmx:100796871 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01877 18 51675843 51679009 Gma18g01877 18 51675843 51679009 ECH
Gma18g01877 18 51675843 51679009 Gma07g01414 07 18988986 18992555 GST