Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01853 ATGGACATGGCTTCCAGTCCCCGCACCGTTGAAGAGATCTTCAAGGATTACGGCGCCAGAAGAACTGCCGTTATTCGCGCTCTCACTCACGACGTTGATGAATTTTACGGCCTCTGTGATCCAGATAAGGATAACCTGTGCCTCTATGGACATCCAAATGAGGCCTGGGAAGTAACTCTGCCAGCGGAGGAAGTTCCGCCAGAGCTCCCTGAGCCTGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCGTGGTTGGTTTCTGTGGCCTTTTACCTCGGGGCTCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCATCTGTTTTTGAAGTTGTGACTGACAGGAAACCAGTTAAGGACAAGCCAACTGCAGATAGTGGAAGCAAGTCTAGGGGAAGTGCCAAGAGATCTAGTGATGAGCAAGTTAAAAGCAACCCAAAGTTTGTAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAATGAAACACTTTGTGGAAGCTGTGGCGGAAATTACAATGCTGATGAGTTTTGGATTTGCTGTGACATATGTGAGAGGTGGTTCCATGGGAAGTGTGTTAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATATAAATGTCCATCATGCAGCCTGAGGCGGGGCAGGCCATAG 720 0.4764 MDMASSPRTVEEIFKDYGARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTDRKPVKDKPTADSGSKSRGSAKRSSDEQVKSNPKFVDEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01853 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Gma18g01853 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Gma18g01853 239 SMART PHD_3 185 233 IPR001965 -
Gma18g01853 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Gma18g01853 239 MobiDBLite consensus disorder prediction 137 176 - -
Gma18g01853 239 MobiDBLite consensus disorder prediction 137 171 - -
Gma18g01853 239 CDD PHD_AL_plant 185 235 IPR044104 -
Gma18g01853 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Gma18g01853 239 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 3 238 - -
Gma18g01853 239 Pfam PHD-finger 186 233 IPR019787 -
Gma18g01853 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Gma18g01853 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01853 Gma-Chr18 51182858 51187537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01853 4 238 Alfin-like Transcription Factor Family AT5G05610 75.000 1.56e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gma18g01853 Alfin 3.9e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01853 - - gmx:100819621 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01853 18 51182858 51187537 Gma18g01853 18 51182858 51187537 ECH
Gma18g01853 18 51182858 51187537 Gma07g01392 07 18491055 18495135 GST
Gma18g01853 18 51182858 51187537 Gma03g00456 03 8077341 8080946 PCT
Gma03g00456 03 8077341 8080946 Gma18g01853 18 51182858 51187537 PCT
Gma01g01135 01 40242695 40243355 Gma18g01853 18 51182858 51187537 PCT