Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01852 ATGGGCGTGGACTACTACAAGATTCTTCAGGTAGATAGAAGTGCCAAAGATGAGGATCTCAAGAAAGCATATCGAAGGCTAGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGATGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGAGGGGTTGAATGGGGTGCCGCCAGGCGCAGGTGGTTTTCCTGGTGGTGGCGACGGTGGGCCGACGTCATTCCGGTTCAACCCCAGAAGTGCAGATGATATATTTTCCGAGTTTTTCGGGTTTTCGAGACCCTTTGGTGGTGGAATGGGGGACATGGGTGGCCGAGCTGGTGGCTCTGGATTTTCCAGGGGTGGCCCGTTTGGTGAAGATATCTTTGCTCAATTTAGGAGTGCAGCTGGGGAGAGCTGTGGCCATATGCAAAGGAAAGGTGCAGCCATTGAGAGACAATTGCCTTGTAGCTTGGAGGATTTGTATAAAGGGACTACCAAGAAAATGAAGATTTCAAGGGATGTTAGTGATGCCAGTGGGAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAGCAGAGAGGAGTTATCCCTTCGGACCTTGTCTTTATTATTGATGAGAAGCCTCATAGTCTCTTTAAAAGGGATGGCAATGATCTTGTTGTCACCCAGAAGATATCGCTTGTAGAAGCCTTGACAGGTTACACAGTGCAGCTGACAACCCTTGATGGGCGGAATCTTACATTCCCCATTAACTCCACTATTAGTCCAACATATGAAGAAGTTGTCAAAGGAGAGGGTATGCCCATTCCAAAAGAACCTTCCAAGAAGGGAAACTTAAGAATCAAGTTCAATATCAAGTTTCCCTCCAGGCTTACATCCGAACAGAAAAGTGGCATCAAGCGATTATTGACATCTCCTTAA 1023 0.4575 MGVDYYKILQVDRSAKDEDLKKAYRRLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRGIYDQYGEEGLNGVPPGAGGFPGGGDGGPTSFRFNPRSADDIFSEFFGFSRPFGGGMGDMGGRAGGSGFSRGGPFGEDIFAQFRSAAGESCGHMQRKGAAIERQLPCSLEDLYKGTTKKMKISRDVSDASGRPSTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRNLTFPINSTISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01852 340 Pfam DnaJ C terminal domain 164 322 IPR002939 -
Gma18g01852 340 SMART dnaj_3 3 62 IPR001623 -
Gma18g01852 340 Gene3D DnaJ domain 3 121 IPR036869 -
Gma18g01852 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gma18g01852 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gma18g01852 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gma18g01852 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gma18g01852 340 CDD DnaJ 4 59 IPR001623 -
Gma18g01852 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 165 243 IPR008971 GO:0006457|GO:0051082
Gma18g01852 340 Gene3D - 243 323 - -
Gma18g01852 340 Pfam DnaJ domain 4 67 IPR001623 -
Gma18g01852 340 PANTHER BNAANNG28460D PROTEIN 1 339 - -
Gma18g01852 340 SUPERFAMILY Chaperone J-domain 3 122 IPR036869 -
Gma18g01852 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gma18g01852 340 Gene3D - 162 241 - -
Gma18g01852 340 CDD DnaJ_C 164 325 - -
Gma18g01852 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 246 331 IPR008971 GO:0006457|GO:0051082
Gma18g01852 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 339 - -
Gma18g01852 340 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01852 Gma-Chr18 51171123 51176160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01852 5 69 C2H2 Transcription Factor Family AT1G74250 36.232 3.63e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01852 K09510 - gmx:100818358 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01852 18 51171123 51176160 Gma18g01852 18 51171123 51176160 ECH
Gma18g01852 18 51171123 51176160 Gma07g01391 07 18481452 18485855 GST
Gma18g01852 18 51171123 51176160 Gma03g00458 03 8131917 8136838 PCT
Gma03g00458 03 8131917 8136838 Gma18g01852 18 51171123 51176160 PCT