Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01838 ATGGGGACAAGCAGTTTTCTATGGAACTGTACTAAAAAATTCATCACAGCCGGGATCGTCACTGTGACTGTGACTGATCATTTTGTGACAGTTATTCCAGTTCGAGGCGGATCTATGTCTCCCACATTTAATCCTAAAGCTGGTTCTCATATGGGAGATGTTTTTGATGACTATGTTTTGGTTGAGAAATTTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGCTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCTGGTGAATGGTTTGGCACTCATCATAACAATGATGTGATTCAGATTCCATTAGGACATTGTTGGGTTGAAGGAGACAACACCGCTTCTAGCTTGGATTCAAATTCATTTGGACCAATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCGCAACGATTATCTTCTTTTTAG 510 0.4255 MGTSSFLWNCTKKFITAGIVTVTVTDHFVTVIPVRGGSMSPTFNPKAGSHMGDVFDDYVLVEKFCLRNYKFSHGDVVVFRSPLNHKETHVKRIAALPGEWFGTHHNNDVIQIPLGHCWVEGDNTASSLDSNSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPQRLSSF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01838 169 CDD S26_SPase_I 34 145 IPR019533 GO:0004252|GO:0006465
Gma18g01838 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gma18g01838 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gma18g01838 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gma18g01838 169 Pfam Signal peptidase, peptidase S26 10 99 IPR019533 GO:0004252|GO:0006465
Gma18g01838 169 Pfam Signal peptidase, peptidase S26 108 150 IPR019533 GO:0004252|GO:0006465
Gma18g01838 169 Gene3D Umud Fragment, subunit A 24 162 - -
Gma18g01838 169 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 164 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Gma18g01838 169 SUPERFAMILY LexA/Signal peptidase 28 158 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01838 Gma-Chr18 50918697 50922400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01838 39 162 MADS-box Gene Family AT1G29960 36.154 1.93e-20 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01838 K09648 - gmx:100527429 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01838 18 50918697 50922400 Gma18g01838 18 50918697 50922400 ECH
Gma18g01838 18 50918697 50922400 Gma07g01375 07 18226216 18229657 GST