Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01833 ATGGAGGGGAGGAATGAAGTCGCGACGCAACAGGGAGGGGAAGGAGGCGTCAATGGCTTCGATGATTGGTGTGGGGAGGGATGGTTGAAAACTCAGGCTAGGATTTTGGTTATAACAGTGATTCAAATTTCAAACCATGCTGTGAATTCTTTTACCCCTGCAGTGTATTCAAGTTTCCAACTTGCTTCATTCTTTTCCAAGGAGACTGGAGCTGGGGCCATAGTCATGTTTTGCAATTGGTTTGGTGCTTTGAATTGGTGTGGAAGGAGGGATGATCCTGAAGAGCAGCCTCATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACTCGAGATTTTCATCCTTCAAGTAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGCTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACCCATGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTGTTGAGGGCGGTCACCGAATATTGGTTTATGAATTTTTGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAGGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACGGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGCAACATATTGCTGGATGGGAGCTTTAATCCGAAAATTGGGGACTTTGGTCTGGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGATGTGTACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGAAGAGGATTATTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAAGGAGAAAATAGGCTTCTGGACCTTGTTGATTCAGAACTAAGTGAATATGATGAGAGTGTGGTGTACCGGTTCCTTATAGTGGCTCTATTTTGCACCCAATCAGCAGCTCAACATAGACCAAGCATGAAGCAAGTATTGGAAATGCTTTCCAAGGAAGTTCATCTCAATGAGAAGGCATTGACTGAGCCTGGAATTTACAGATGGCACAGCACTGGAAAGAAGTGTGGTTCTTTGAATGAGACATCATCTTCTCAAGCAATCAAGTACAAAAGAACCGAAAATCCGCATGAAGCAAATTCAACTCACTTTAGTGGTACAGATATTGTGACAGAGATGCTTCCAAGATGA 1368 0.4269 MEGRNEVATQQGGEGGVNGFDDWCGEGWLKTQARILVITVIQISNHAVNSFTPAVYSSFQLASFFSKETGAGAIVMFCNWFGALNWCGRRDDPEEQPHEQVVATKKFSYNSLRSATRDFHPSSKIGGGGYGVVYKGVLRDGTQAAIKSLSVESKQGTHEFMTEIDMISNIRHPNLVELIGCCVEGGHRILVYEFLENNSLASSLLGSKGKYVALDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDGSFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSIAAFEEDYLVLVEWAWKLKGENRLLDLVDSELSEYDESVVYRFLIVALFCTQSAAQHRPSMKQVLEMLSKEVHLNEKALTEPGIYRWHSTGKKCGSLNETSSSQAIKYKRTENPHEANSTHFSGTDIVTEMLPR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01833 455 Pfam Protein tyrosine and serine/threonine kinase 122 389 IPR001245 GO:0004672|GO:0006468
Gma18g01833 455 ProSitePatterns Protein kinases ATP-binding region signature. 125 147 IPR017441 GO:0005524
Gma18g01833 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Gma18g01833 455 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 99 439 - -
Gma18g01833 455 SMART serkin_6 119 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01833 455 CDD STKc_IRAK 138 391 - -
Gma18g01833 455 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 99 439 - -
Gma18g01833 455 Gene3D Phosphorylase Kinase; domain 1 88 194 - -
Gma18g01833 455 Gene3D Transferase(Phosphotransferase) domain 1 195 403 - -
Gma18g01833 455 ProSiteProfiles Protein kinase domain profile. 119 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01833 455 SUPERFAMILY Protein kinase-like (PK-like) 98 389 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01833 Gma-Chr18 50836890 50845378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01833 94 404 Receptor kinase-like Gene Family AT1G56120 51.768 1.55e-103 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma18g01833 PK_Tyr_Ser-Thr 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01833 - - gmx:100785766 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01833 18 50836890 50845378 Gma18g01833 18 50836890 50845378 ECH
Gma18g01833 18 50836890 50845378 Gma07g01372 07 18181286 18187418 GST