Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01818 ATGGCCACAAGCCTTTGGATTATGGACCGGGCCTTTGAATTGATGCAGAGAAGTGACATTATAATTCAAGGGCTGACCATTCTTGCTCCAGTTGACTCTCCAAACACTGATGGAATAGATCCAGGCGACTCATGTTTAAGAAAGAATTTGACACAATCTATGTGGGATTCAATTCTGGATCAGAGCTTCTCTCTCATCAGAATTTATGTAATGCGTACCATGACTTCAAAATACATGTCATCTTGCTACCTTCTATATGGCTGCTTTGTGCCACTATATGGAATTGACTCCTATGCTTTTGGCATGGTTCATCCAATTCTGGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAGTTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGGGTGTAAAATGTGGTATTTATGGTGCCAAATCTGCATAA 501 0.4032 MATSLWIMDRAFELMQRSDIIIQGLTILAPVDSPNTDGIDPGDSCLRKNLTQSMWDSILDQSFSLIRIYVMRTMTSKYMSSCYLLYGCFVPLYGIDSYAFGMVHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKGVKCGIYGAKSA 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01818 166 Pfam JmjC domain, hydroxylase 104 153 IPR003347 -
Gma18g01818 166 Gene3D Cupin 43 158 - -
Gma18g01818 166 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 102 155 IPR045109 GO:0032454|GO:0033169
Gma18g01818 166 SUPERFAMILY Pectin lyase-like 4 88 IPR011050 -
Gma18g01818 166 PANTHER PROTEIN B160 102 155 - -
Gma18g01818 166 SUPERFAMILY Clavaminate synthase-like 104 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01818 Gma-Chr18 50569484 50573083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01818 18 45 Glycoside Hydrolase AT2G23900 67.857 1.00e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma18g01818 JmjC 1.8e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01818 K15601 - gsj:114405045 117.087