Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01777 ATGTCCGCTTTGCAGATGTCCCATGTTGATTTGGAGCAAGGGAATGGGAATCATCGCCGGTCGGTTGTTGGAAGTGATGTGAGTGGTGAAGGGAGCTTGTGCTTCTCTGATGTTGATGATGGTTCTTGCTATTCCCGTTTCTACTCAACAAACGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATGCTGAGGTTGGGGGTGTTCCACATTCTGGGAGAGCTTCTTCTGCTTCTGAGTGTTCTGTGGAGGTGGAAGCTAGAAGTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAATTTGGTGCCCCCATTGAATTGGGATGTTCTTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGCCATTCTGTTGCTCGGAATGTTTATGGAGGGCATGAGGAGTCGACTGAGCATTTGAGCGACGCTAACAATGCTATTACAGCAGCCACACTCTCTACACCTGCTCCTTCAGCAGAACCTCGAAGATTTTGGCACGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCACTTTAATGTGCCATCATCCTAG 642 0.4688 MSALQMSHVDLEQGNGNHRRSVVGSDVSGEGSLCFSDVDDGSCYSRFYSTNGGSYDDYSFACVSDAEVGGVPHSGRASSASECSVEVEARSGVPEIKVHLAKFGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGHEESTEHLSDANNAITAATLSTPAPSAEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01777 213 PANTHER OS01G0850200 PROTEIN 5 212 - -
Gma18g01777 213 PANTHER ZINC FINGER, RING-CH-TYPE 5 212 - -
Gma18g01777 213 MobiDBLite consensus disorder prediction 1 21 - -
Gma18g01777 213 ProSiteProfiles Zinc finger RING-CH-type profile. 75 147 IPR011016 GO:0008270
Gma18g01777 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 149 IPR013083 -
Gma18g01777 213 SUPERFAMILY RING/U-box 104 144 - -
Gma18g01777 213 SMART ringv_2 99 141 IPR011016 GO:0008270
Gma18g01777 213 Pfam RING-variant domain 106 140 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01777 Gma-Chr18 49518290 49520867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01777 71 213 C3H Transcription Factor Family AT5G05830 55.556 1.04e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01777 - - gmx:100808666 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01777 18 49518290 49520867 Gma11g02278 11 38165906 38167199 ECH
Gma18g01777 18 49518290 49520867 Gma02g02389 02 49959951 49965007 ECH
Gma18g01777 18 49518290 49520867 Gma14g00537 14 5155896 5160740 ECH
Gma18g01777 18 49518290 49520867 Gma18g01777 18 49518290 49520867 ECH
Gma18g01777 18 49518290 49520867 Gma07g01308 07 17229101 17233526 GST