Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01710 ATGCACAGCAGTGCGGAGGTCTCACAGTGCGGCAGCGACGAGGAAGTCTGGTGTCACATCGCATCGCTAGCGAGGAATGTTGCAGTGTGTTATGGCGGCACGAACAAAGTGGAGACTAAGAGGAGAGAACGAATAGGTGGAGAGAAAGAGAGTGGAAGCACAAGAGGTAACAACGGTGTGGAGATGGAGAGGCGGAGAGGCATCGAGGTTCGAAATGACGATGACGATGAGGACTGCGTGAACAACGGTGTCGTTTCGTTCGCGAAGATCCTCACTCCCTCCGATGCCAACAACGACGACGGCTTCTCCGTGCTGCACTTCTACACCGACTCGTGCTTCCCTTCGCTGGACTTCCGCGCCAATCCGCCTGTCCAGCTCCTCTCTGTCGCCGACATCCACGGCGTCGAGTGGCACTTCTGCCACATCTATCACGGCACACCGTGTCGCCACCTCTTCACCACCGGCTGGAGCAAGTTTGTCAACCACAAGAAGCTCGTCGCTAGCAACACCATCAATTTCGTCAAGGACTCCAACGGTAGCGTCTCTGTCGGAATCCGTTGTGCGGCTTGGTTTGTGGCTGCGATCGAGACTCCGCTGCCTATAGAACGGGAGGATTTTCGTGGTCCGCGATGA 633 0.564 MHSSAEVSQCGSDEEVWCHIASLARNVAVCYGGTNKVETKRRERIGGEKESGSTRGNNGVEMERRRGIEVRNDDDDEDCVNNGVVSFAKILTPSDANNDDGFSVLHFYTDSCFPSLDFRANPPVQLLSVADIHGVEWHFCHIYHGTPCRHLFTTGWSKFVNHKKLVASNTINFVKDSNGSVSVGIRCAAWFVAAIETPLPIEREDFRGPR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01710 210 ProSiteProfiles B3 DNA-binding domain profile. 87 189 IPR003340 GO:0003677
Gma18g01710 210 Gene3D - 84 187 IPR015300 -
Gma18g01710 210 SUPERFAMILY DNA-binding pseudobarrel domain 83 188 IPR015300 -
Gma18g01710 210 Pfam B3 DNA binding domain 87 186 IPR003340 GO:0003677
Gma18g01710 210 SMART B3_2 87 189 IPR003340 GO:0003677
Gma18g01710 210 CDD B3_DNA 86 181 IPR003340 GO:0003677
Gma18g01710 210 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 73 198 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma18g01710 210 PANTHER AUXIN RESPONSE FACTOR 73 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01710 Gma-Chr18 47797103 47799494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01710 71 186 B3 DNA Binding Superfamily AT1G77850 58.621 1.44e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma18g01710 B3 4.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01710 - - gmx:100805638 222.246