Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01704 ATGTCAAAGAGGGACAAAAAAGAAAGCTTACAACAAAACAAGGGTTCAGTTTGGGCAAACACGGAAAGAGGTGACCTGAGTCATGAGAGGCTAGGGGTGCACCGCCGCAGAAGGGGTGACCTGAGTCACGATGACCACCGTGGGCATACTCTCATAATGGAGGAGGGTCATTGTTGGATCAAGACTAAGAGAAAATACTCTATGAACTCTAGTATTGATTCACCTACTAATTACCCCTCCTCCTATGATGACTACTCATGGGAAGAACAAGCCTTTGCAAAAGATGCAGCTTGGTCTGGTTGCATATGGCCACCACGATCATATTCTTGTAGGTTTTGCAGAAAGGAATTTAGGTCAGCACAGGCTTTAGGTGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGACTGAAGCAGCCATATAGCCCTGATCAGAATGAAATCCTCAGTGATGGTCTTGAGAAAACCACTCAACAGCAGAGTTCAGTTCAGATTTCTTTTACTTCTTTGGGTTACTTATACCCATCTTCTCTTGATGGATTGGCTCCTAACACTAGCCCTAATTCTGATCCTTATTCTCATGCTCCTGCTTCACCTTCCAAGTTTTTAGCCTCATCAATCAACAAGAGAGGAAGAGAGAAACCCCAGATTCCACTTTACAAAGGATGTCTTGAGTCTTCTCCTGATCTTCCTTCCAAATCCATGTCAAATTTAACTGAAGACTTCAGATTTTGTTCACGTAGGCTCGATCCTGAAGCTGGTGTTGAGAAAATGTTGAAGGGATTGGATTCTGGGTGTAGGAGTACTGAGAGAGATGATGCTAAAACTGATGTGGCTGTGATCTTAAACCTGTTTATGAATCAACCTCACCCACCTGTGAAGTTTGAGACTAAGGAGAAATATACAAGTTTCAAGAAGGGGAAAGCAGATGCTTCATCCATTCCATTCTTCCCCAAATCATGCTCAGCTGATAGGCATCATATGCAGTCACAGATGTATGAATTTAGCCCTAGTTCCATAGAAGAACTAGATCTGGAGCTAAGGCTTGGTTATAGGTCCAAGGTATAG 1068 0.4298 MSKRDKKESLQQNKGSVWANTERGDLSHERLGVHRRRRGDLSHDDHRGHTLIMEEGHCWIKTKRKYSMNSSIDSPTNYPSSYDDYSWEEQAFAKDAAWSGCIWPPRSYSCRFCRKEFRSAQALGGHMNVHRRDRARLKQPYSPDQNEILSDGLEKTTQQQSSVQISFTSLGYLYPSSLDGLAPNTSPNSDPYSHAPASPSKFLASSINKRGREKPQIPLYKGCLESSPDLPSKSMSNLTEDFRFCSRRLDPEAGVEKMLKGLDSGCRSTERDDAKTDVAVILNLFMNQPHPPVKFETKEKYTSFKKGKADASSIPFFPKSCSADRHHMQSQMYEFSPSSIEELDLELRLGYRSKV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01704 355 PANTHER OS07G0101800 PROTEIN 53 354 - -
Gma18g01704 355 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 53 354 - -
Gma18g01704 355 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Gma18g01704 355 Gene3D Classic Zinc Finger 105 165 - -
Gma18g01704 355 MobiDBLite consensus disorder prediction 1 22 - -
Gma18g01704 355 MobiDBLite consensus disorder prediction 181 200 - -
Gma18g01704 355 SUPERFAMILY beta-beta-alpha zinc fingers 105 134 IPR036236 -
Gma18g01704 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01704 Gma-Chr18 47668065 47669949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01704 52 145 C2H2 Transcription Factor Family AT5G06070 50.000 8.17e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma18g01704 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01704 - - gsj:114396020 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01704 18 47668065 47669949 Gma02g02363 02 49699357 49700217 ECH
Gma18g01704 18 47668065 47669949 Gma14g00571 14 5467698 5468531 ECH
Gma18g01704 18 47668065 47669949 Gma18g01704 18 47668065 47669949 ECH
Gma18g01704 18 47668065 47669949 Gma07g01266 07 16428585 16429977 GST