Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01687 ATGGCATCACTGGGATCTCCGTCTTCATCATTCTGGTGCTACCGCTGCAACCGCATCGTTAGGGTTCCACAAAACGACGCCGTTCTCCTCTGCCCAGATTGCAACTCCGGCTTCCTAGAAGAGCTACAAACCCCTCCCCACTCGCGCCGATCCACGCGCGGTGGCGGCGGGTCCCCCTTCAACCCGGTAATCGTCCTCCGCAACGCGAACGACGTCGTCTCGCCCGAAACGCGGAACTTCGAACTCTACTACAACGACGCCGTTTCAGGTTCCTCCGGCCCAAGCACTCTCCGCCCCTTACCGCAAGGAGTAACCGAGTTTCTCATGGGCTCGGGCTTCGACAATTTACTCGACCAGCTCGACGGCGCCGCGGGGGGCAGCGCTCCGCCTCCCCCCGCGGCGGCGTCGAAAGCGGCGATTGAGTCGATGCCGGTGGTTAAGATCCTCGCGAGCCACACCTACGCAGAATCCCACTGCGCGGTTTGCATGGAGAATTTCGAGATCAACTGCGACGCACGTGAGATGCCGTGCGGGCACGTGTACCACTCAGAGTGCATCGTGCCGTGGCTCTCGGTGAGAAACTCGTGCCCCGTATGCCGCCACGAGGTTCCTTCCGATGAAGTTGAAGAAAGTAATAGTAATAGTAACAATAATACTGTGGGGTTGACTATTTGGAGACTTCCTGGGGGGGGATTCGCTGTGGGCAGGTTCATCGGAGGGAGGGAGCTCCCGCTGGTTTACACGGAGATGGACGGAGGGTTTAACGGCGCTAACGGCGCTCCCAGAAGAGTCGCTTGGGATAGCTCTGTTGGGAGGTCTAGGGAGAGCAGAGGGTTCGGTTCTGCTCTGAGGAATGTCTTTTCGTATTTCGGGAGGGTGAGGAGCTCGTTTTCTCGCCGAACGAGAAATTCGCGTGCCAACGGAAGATCTCGCTCTTAA 939 0.5857 MASLGSPSSSFWCYRCNRIVRVPQNDAVLLCPDCNSGFLEELQTPPHSRRSTRGGGGSPFNPVIVLRNANDVVSPETRNFELYYNDAVSGSSGPSTLRPLPQGVTEFLMGSGFDNLLDQLDGAAGGSAPPPPAAASKAAIESMPVVKILASHTYAESHCAVCMENFEINCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVPSDEVEESNSNSNNNTVGLTIWRLPGGGFAVGRFIGGRELPLVYTEMDGGFNGANGAPRRVAWDSSVGRSRESRGFGSALRNVFSYFGRVRSSFSRRTRNSRANGRSRS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01687 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 275 - -
Gma18g01687 312 SUPERFAMILY RING/U-box 139 206 - -
Gma18g01687 312 ProSiteProfiles Zinc finger RING-type profile. 159 200 IPR001841 -
Gma18g01687 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 206 IPR013083 -
Gma18g01687 312 CDD RING-H2_PA-TM-RING 158 200 - -
Gma18g01687 312 Pfam zinc-ribbon 10 42 IPR039525 GO:0061630
Gma18g01687 312 Pfam Ring finger domain 158 200 IPR001841 -
Gma18g01687 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RDUF2 9 275 - -
Gma18g01687 312 Pfam Protein of unknown function (DUF1117) 220 307 IPR010543 -
Gma18g01687 312 SMART ring_2 159 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01687 Gma-Chr18 47332210 47333637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01687 99 216 C3H Transcription Factor Family AT5G01980 38.983 7.73e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01687 - - gmx:121172634 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01687 18 47332210 47333637 Gma18g00348 18 2931111 2932612 ECH
Gma18g01687 18 47332210 47333637 Gma11g02228 11 37612954 37614726 ECH
Gma18g01687 18 47332210 47333637 Gma02g02352 02 49613810 49614985 ECH
Gma18g01687 18 47332210 47333637 Gma14g00579 14 5573372 5574655 ECH
Gma18g01687 18 47332210 47333637 Gma18g01687 18 47332210 47333637 ECH
Gma18g01687 18 47332210 47333637 Gma07g01252 07 16295225 16296148 GST