Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01685 ATGTCTCGCAAAGAAAACCTCCTATGTGAACTGCATACAAAGAAAGGTACTTGGAAGATAGTGATGCGAATAACTGATATGTGGCATCTTAACAAGCATAATGGTCGACAATCCATTGAGATGGTGTTGATGGACCATACGGGTACAAAGATTGGGGCAACTCTATGGCAAGAATTGTTCCCTGAATTTGAGCCCAAGTTGCGTTGTGGTGGTGCATATGTTATTCAGAACGTGAAGGTTGTTGATACTCATTCTGACTACAAAGTGACTACAATTAAATATTTGGTTTATTTTGTGAAGACAACGTCTGTGAAAGAGGTAGAAAGACCTGAGATTCCTCCTAATGTTCATGCCATTACTTCATTTGCTGATATAATTTCAGGCGTTGCAAAACCTGATACTTTAGTTGATGTTGTTGGTGCTATTGCTGAAGTGATTGAGCGCAAAACAGTTAATCCTGCATACAGAGTGACTATCAAGTTGAGAGACAACAGTCATGCTGAGATCATCATGACTGTGTGGGAGGAATATGCTCTTCAGCTGGATGATGCTATTGAGAAAAACCATTTTGTGCAAAAGCCATTGGTTGTTATGCTAACCCTTGCTAAGATCAAAGAACCCAAGGTTTACGTGTGCATTTATATTGGCGGTCTAGATGATGAGGGTGGTGTTTCTCAGTCGCAGTCTACCCAGTATTGCCAAGATAAGTTTTTGCATAATGCTCAAATAGTGAGCTTTGGTGAAATAAAGACTCTGCGACAGGATTGTTACTGTTTGGCTGTTGGCACTGTCGATGAAGTGATGATTGATACACCATGGAGTTATGACAGTTGTCCATACTGTACTACCACTTTTAATCCATTAAAAATAGGTGCAGTCTGTCGTTCGTGCCAGAACCATGTTACTCACACTATTCCAAGGTATAAGTTAGTTGTCAAGATGAAACAGAATGGGGAGAAGGCTAACTTCCATTTTTGGGATGCAGTATGTATCAAAATATTTGGTAAAACTGCAGATGAATGTCGTCAAGAGTTGATTGCGAGTGGTGATGAGATCAAGGTGTTACCTGCGTGTGTTGATCAATTGTTGGGTAAAACTTGGGTTGTCAGATTCAAACACCGTATACAAATGCACCAATCATCTGTGTTGGATTTTAGTGAACAGAAACATCATATACAATCAGTGATATCCACGCTAGGTCTACAGCCTTCATCGTCACAGTCAGCTGAATATGATCCTGGAAATACTGTCTTTGTAACTCCTGCAAAAAGAATGTCCGATCAACAAGGAAGTAGTCAGTTTGATAGTGACGAGTTCGCAACATATGAACTATCGACCAACAAGCATATAAAAGCTGAACTACATGATGTTCATGTTTGTAACACTATTGACTACGATATTCATCATGTTCAGTCCCCAGATTTGGAAAATATGACTGTCTTCCAGAATATCATTGAGGTACCCTCACTTTATCATAAACAATGGGCTCTAGATTACCCAAATTATGTGGTGTTGGACTACAATGGAAACAAGCACCATATAAGAGTTAGAAAATTTAATAATCGAGTCTACATTGCTGATGGTCTCAAACACTTCAGGAGGGATATGGGAATATATGAAGGTGTGATGATCACATTTGCTGTGCCGGACAAGAATTGGAAGTTTGATATCCACTTCTCACCACCACTCCATGCACAGACATGTGGCAGGCCTCCATATTCTGCCAGAGAATATGTGTTTACTATGGATGTCGACAATCGCATGATTGTTAGACTTTATCCATTGGTACTGCCACTCGATGCTGTGAGTTATGTTAATGCAGGAGACGAGTATATTACTGTCCTTGGTGTTCGTGAGCGTCGTCACTTTTGGAAGTTAAGTATCCATAATGGGCTTCAATGTCTTGCTGAGCCATGGTTCCAATTCTTAACAGAAAATGATTTGATGGCCGGTGACGAAGTTGTCTTTTATTTCAGGCCGAATCAACTTCTTTGGGAGGTCATTGCCAGAAAGTAG 2016 0.4023 MSRKENLLCELHTKKGTWKIVMRITDMWHLNKHNGRQSIEMVLMDHTGTKIGATLWQELFPEFEPKLRCGGAYVIQNVKVVDTHSDYKVTTIKYLVYFVKTTSVKEVERPEIPPNVHAITSFADIISGVAKPDTLVDVVGAIAEVIERKTVNPAYRVTIKLRDNSHAEIIMTVWEEYALQLDDAIEKNHFVQKPLVVMLTLAKIKEPKVYVCIYIGGLDDEGGVSQSQSTQYCQDKFLHNAQIVSFGEIKTLRQDCYCLAVGTVDEVMIDTPWSYDSCPYCTTTFNPLKIGAVCRSCQNHVTHTIPRYKLVVKMKQNGEKANFHFWDAVCIKIFGKTADECRQELIASGDEIKVLPACVDQLLGKTWVVRFKHRIQMHQSSVLDFSEQKHHIQSVISTLGLQPSSSQSAEYDPGNTVFVTPAKRMSDQQGSSQFDSDEFATYELSTNKHIKAELHDVHVCNTIDYDIHHVQSPDLENMTVFQNIIEVPSLYHKQWALDYPNYVVLDYNGNKHHIRVRKFNNRVYIADGLKHFRRDMGIYEGVMITFAVPDKNWKFDIHFSPPLHAQTCGRPPYSAREYVFTMDVDNRMIVRLYPLVLPLDAVSYVNAGDEYITVLGVRERRHFWKLSIHNGLQCLAEPWFQFLTENDLMAGDEVVFYFRPNQLLWEVIARK 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01685 671 SUPERFAMILY Nucleic acid-binding proteins 8 108 IPR012340 -
Gma18g01685 671 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Gma18g01685 671 SUPERFAMILY DNA-binding pseudobarrel domain 591 662 IPR015300 -
Gma18g01685 671 SUPERFAMILY Nucleic acid-binding proteins 253 380 IPR012340 -
Gma18g01685 671 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 10 367 - -
Gma18g01685 671 Gene3D - 224 398 IPR012340 -
Gma18g01685 671 Gene3D - 7 109 IPR012340 -
Gma18g01685 671 PANTHER REPLICATION FACTOR A 1, RFA1 10 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma18g01685 671 SUPERFAMILY Nucleic acid-binding proteins 119 206 IPR012340 -
Gma18g01685 671 SUPERFAMILY DNA-binding pseudobarrel domain 502 558 IPR015300 -
Gma18g01685 671 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01685 Gma-Chr18 47296245 47301919 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01685 1 340 Core DNA Replication Machinery Family AT5G08020 22.135 1.12e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01685 - - gmx:106797010 874.004