Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01656 ATGGCTGAGGTGGTGAAATCAGAGGAGTGTTGTCAGGAGAATAAGCAATCTACTGCTGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCGGCGATATGTAGCCCCGCATCCACATCACCCTCACATCGGAGGACCACTGGCCCTATAAGGCGTGCTAAGGGTGGTTGGACAGCGCAGGAGGATGAAACATTAAGGAATGCTGTTGCAGTTTTTAAGGGAAAGAGTTGGAAGAAAATAGCTGAGTTTTTCCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAGGAGGAGGATGATAAAATTGTTGAACTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCCGGTCGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAACCCTGACATAAAGAAGGATGCCTGGACTTTGGAAGAGGAATTGTCCTTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAGCTACAGGAAGACTTCCACCAATTCCTAAGAATAGTCCACAAGTTCCTGTCAAAGATACAATTAGACGTTCTGCTAGTAAATCAATACTTGGTTGTTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCATCTGAAACTACATCCATTAGTAAGCTAGATGACCGGGGCAGGAATCAGTTTGAGTCCTCTGGCACAGTTAGAGAAGTTGGTGATTGTTCAAGTGTTCCTGCAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGCCTGGATCATCAAACATTGATCTCAGCTGTAGCAACTCAGAACAATTGTCTAGAGCTAATTTTGGAACAACTTTTGGGCTAATATCTGAGAATTCTGGAATCAATGGAAACTCAAATTTTGAGCATTGTACAAACAATGGTGACATGAGCAGTACCAGGTTAATTGGAACATCTTCTCAAGAAAGCCCTACCTGTGGTTCTTTGTGTTATGAGCCACCACAGTTAGATGGTTCAGTTCCCATAGATTCTCTTTATTTAAATTATATTTGCCAGCAGAATGAGTACTGTCCAAGTCCAACAATGTCACCTATTGGTTTCTTCACTCCACCTCGAGTGAAGGGTAGTCAATTATGCACTGAGACACCTGAATCGATCTTGAAAAAGGCTGCTAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGAAAAACTGGGGCCCAAACACTCACCAGTCCCAGTAAAGTTTTGAAAGTAGATAACAATCCACATACTTCTAAAACAGAGAGAACCGATGATGATTCTGGTTCTGGGCATTTCTCCAGGAGTCCAGCAAGCCATGGCAATGGGATTGACATTCCCAACAATAAGGCATTCAATGCATCTCCCCCATACAGGTTAAGATCCAAGCGAACAGCAATTGTCAAGTCAGTGGAGAAACAACTGGAGTTTGCATTTGACAAAGAGAAGAATGACGACAAGAGGATGCATAAATTGGGACTTGCATTTGAAGGTAGCTGA 1662 0.4188 MAEVVKSEECCQENKQSTAASCSSVSEGSGSAIHKSPAICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELSLMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKNSPQVPVKDTIRRSASKSILGCSNKELNAAVETSSETTSISKLDDRGRNQFESSGTVREVGDCSSVPANESADSDCVECKPGSSNIDLSCSNSEQLSRANFGTTFGLISENSGINGNSNFEHCTNNGDMSSTRLIGTSSQESPTCGSLCYEPPQLDGSVPIDSLYLNYICQQNEYCPSPTMSPIGFFTPPRVKGSQLCTETPESILKKAANTFPNTPSILRRRKTGAQTLTSPSKVLKVDNNPHTSKTERTDDDSGSGHFSRSPASHGNGIDIPNNKAFNASPPYRLRSKRTAIVKSVEKQLEFAFDKEKNDDKRMHKLGLAFEGS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01656 553 Pfam Myb-like DNA-binding domain 60 106 IPR001005 -
Gma18g01656 553 Pfam Myb-like DNA-binding domain 112 158 IPR001005 -
Gma18g01656 553 Pfam Myb-like DNA-binding domain 164 207 IPR001005 -
Gma18g01656 553 MobiDBLite consensus disorder prediction 439 468 - -
Gma18g01656 553 PANTHER MYB-RELATED PROTEIN B-LIKE 367 481 - -
Gma18g01656 553 MobiDBLite consensus disorder prediction 485 503 - -
Gma18g01656 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 213 IPR017930 -
Gma18g01656 553 CDD SANT 166 209 IPR001005 -
Gma18g01656 553 PANTHER MYB-RELATED PROTEIN B-LIKE 19 314 - -
Gma18g01656 553 ProSiteProfiles Myb-like domain profile. 55 106 IPR001005 -
Gma18g01656 553 SMART sant 163 211 IPR001005 -
Gma18g01656 553 SMART sant 59 108 IPR001005 -
Gma18g01656 553 SMART sant 111 160 IPR001005 -
Gma18g01656 553 MobiDBLite consensus disorder prediction 21 65 - -
Gma18g01656 553 CDD SANT 63 106 IPR001005 -
Gma18g01656 553 PANTHER MYB PROTEIN-RELATED 367 481 - -
Gma18g01656 553 PANTHER MYB PROTEIN-RELATED 19 314 - -
Gma18g01656 553 MobiDBLite consensus disorder prediction 260 291 - -
Gma18g01656 553 SUPERFAMILY Homeodomain-like 109 205 IPR009057 -
Gma18g01656 553 MobiDBLite consensus disorder prediction 469 484 - -
Gma18g01656 553 Gene3D - 59 111 - -
Gma18g01656 553 CDD SANT 114 158 IPR001005 -
Gma18g01656 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 106 IPR017930 -
Gma18g01656 553 Gene3D - 112 163 - -
Gma18g01656 553 SUPERFAMILY Homeodomain-like 57 113 IPR009057 -
Gma18g01656 553 MobiDBLite consensus disorder prediction 439 511 - -
Gma18g01656 553 Gene3D - 165 231 - -
Gma18g01656 553 ProSiteProfiles Myb-like domain profile. 107 158 IPR001005 -
Gma18g01656 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 162 IPR017930 -
Gma18g01656 553 MobiDBLite consensus disorder prediction 38 52 - -
Gma18g01656 553 ProSiteProfiles Myb-like domain profile. 159 209 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01656 Gma-Chr18 46498998 46509096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01656 5 541 MYB Transcription Factor Family AT3G09370 50.272 3.54e-157 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma18g01656 Myb_DNA-bind_6 4.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01656 K09422 - gmx:778081 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01656 18 46498998 46509096 Gma18g01656 18 46498998 46509096 ECH