Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01625 ATGGCTAGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAAGAAGGCCAACAAGCTCACCATTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGAAAACTCCACAAGATCGAGCAATCAACTAAGCAGTTCTTCGATCAATACCAGATGATTCTGGGAGTTGATATTTGGAACTCTCATTACGAGAGAATGGGAGATTGTCTGAATGTGGAAGATCTCAGGCTCCTTGAGGAAGGAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGCTTAGAGAACTAGTACTACAGGATATTGGTACTTATGACTGGCCAGTTGAAGAATGCCACTATTGCTGTCGATGCCTTGTCTGTATGATTCTTGTTGCTTTGACAGGTGAAAAAGGGAAGTTTAATGAGTTGCTTGAGGATAAGGGTGTTAATATATTGATTGATCCAAAGGCCCTTATGAATGTCATTGGAACTAAAATGGATTTTGTAGATGACAAACTAAGATTTAGCCACATAACAAAGTGTGAAGATGGAAACTGGGCATGGCTTGGTATGGGGAAGATGATGACAGGGGCTTTGGTTGAAGAAGGGGCTTTGACAGCCTTAGCATCTATTGCAGATTCTTCAGAGGTGCAATTTCAGAAGTATTATGATGTTGTGATGCCATACTTAAAAGCTATTTTGGTGAACGCAAATGATAAATCTAATCGTATGCTTCGAGCCAAAGCAATGGAGTGCATTAGTTTGGTAGGAATGGCTGTTGGAAAGGAGAAGTTCAGGGATGATGCCAAACAGGTCATGGATGTCTTGATGTCACTGCAACAATCTCAACTGGATGCTGATGATCCAACTGCAAGTTACATATTACAAGCATGGGCACGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATATATGGGTTTTGTGATGCCTCCTTTGCTCCAGTCTGCACAACTTAAGCCCGATGTGACCATTACATCAACGGATTCTGATACTGAATTTGATGAAGATGATGACAGGTGCCCTTTCAGTTATTGTTACTGA 1059 0.4249 MARGKIQIKRIENTTKKANKLTILCDAKVSIIMFSSTGKLHKIEQSTKQFFDQYQMILGVDIWNSHYERMGDCLNVEDLRLLEEGMDKAAKVVRERKLRELVLQDIGTYDWPVEECHYCCRCLVCMILVALTGEKGKFNELLEDKGVNILIDPKALMNVIGTKMDFVDDKLRFSHITKCEDGNWAWLGMGKMMTGALVEEGALTALASIADSSEVQFQKYYDVVMPYLKAILVNANDKSNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMSLQQSQLDADDPTASYILQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDVTITSTDSDTEFDEDDDRCPFSYCY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01625 352 Gene3D - 8 66 IPR036879 GO:0003677|GO:0046983
Gma18g01625 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 41 IPR002100 GO:0003677|GO:0046983
Gma18g01625 352 SUPERFAMILY HesB-like domain 129 171 IPR035903 -
Gma18g01625 352 PANTHER BNAC09G37860D PROTEIN 196 338 - -
Gma18g01625 352 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Gma18g01625 352 PANTHER IMPORTIN BETA 196 338 IPR040122 GO:0006606
Gma18g01625 352 Gene3D - 189 352 IPR011989 -
Gma18g01625 352 SMART madsneu2 1 46 IPR002100 GO:0003677|GO:0046983
Gma18g01625 352 SUPERFAMILY ARM repeat 200 323 IPR016024 -
Gma18g01625 352 Gene3D - 120 178 IPR035903 -
Gma18g01625 352 PRINTS MADS domain signature 24 45 IPR002100 GO:0003677|GO:0046983
Gma18g01625 352 PRINTS MADS domain signature 9 24 IPR002100 GO:0003677|GO:0046983
Gma18g01625 352 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01625 Gma-Chr18 45774496 45779313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01625 1 101 MADS-box Gene Family AT3G54340 43.357 1.09e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma18g01625 SRF-TF 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01625 K20222 - gmx:113000208 425.631