Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01607 ATGGCGGAACCGGAAGCGGAGTCTTTTCGGATGCTCCGGAACCTGACCCGAATCGTGATCCAAATCTCCACCCTCTCCTCCGCCGCATCCTTTGTGCCCATCCTCAAGCCCCAATGCTGCGACCTCGCTCGCCGAATAAGGTTCCTCGCTCCCCTCTTCCAGGAACTGCACGACGACATCGTTTCGAGCCGCGCGGTTCACTTCCTCGCGCTCGAAGACGCGCTCTTCAAGGCCATGGAACTGCTCCGATTCGCCACACGCGCCAGCCAGGTCTTCACGATACTGGATAGAGAGCAAGTTATGTTCGGATTCACTGATGTTGCTGTTCGGTTTGAACATGCATTAAGCATGATCTCCTTTGGCGAGCTTGATGTTTCTGAAGAAATTAAGGAGCAGGTTGCACTTGTGATCACTCAGTTTAGAAGAGCCAAAGCGCAGTTTGATCCGCCTGGTTTTCAGCTTTACGAGCATCTGTTGTTTGTTTACAACCAGAGCTATGATGTGAATACTGAAACTGCTGAACTACGTGTAATCTGTGAAAAGCTACAATTTCTCAATGTGGATGACATCAAGCAAGAGTCACTTGCTCTGCAAAAGATGGTTGTAGACAAGGGTGGCTATTCTCAGAAAAACATACATGATATGTCATTAGTAGTGCTGAAAAAAATTCAAGATTTCTTGGTGATGGAATCTGGAAACAATATTGTGTCACCAAGTGAGGATTTCTCTCATCATACTGATGAGCCATATCTAAAACTATGCCCACAATCACTGGTTATACCTGATGAGTTTCGCTGCCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGATCGATCTTGCATAAAGAAATGGCTTGAAGCAGGGCATAGAACATGTCCCATGACTCAACAGATTCTTTCCACCTCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCGCCTAAAAGGTCAGGAAATTTATGGCTCTGTAAGACAACATCAGATGGCTCTTCTGAATTCATAGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAATGATATCGAGGAACTTCGATGTGCAGTAGGGGAGCTCTGA 1140 0.4588 MAEPEAESFRMLRNLTRIVIQISTLSSAASFVPILKPQCCDLARRIRFLAPLFQELHDDIVSSRAVHFLALEDALFKAMELLRFATRASQVFTILDREQVMFGFTDVAVRFEHALSMISFGELDVSEEIKEQVALVITQFRRAKAQFDPPGFQLYEHLLFVYNQSYDVNTETAELRVICEKLQFLNVDDIKQESLALQKMVVDKGGYSQKNIHDMSLVVLKKIQDFLVMESGNNIVSPSEDFSHHTDEPYLKLCPQSLVIPDEFRCPISLELMKDPVIICTGQTYDRSCIKKWLEAGHRTCPMTQQILSTSILIPNHALYGLISSWCEANGVEPPKRSGNLWLCKTTSDGSSEFIDLDILVSKLSSNDIEELRCAVGEL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01607 379 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Gma18g01607 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 333 IPR013083 -
Gma18g01607 379 PANTHER U BOX DOMAIN-CONTAINING 9 379 - -
Gma18g01607 379 CDD RING-Ubox_PUB 264 306 IPR045210 -
Gma18g01607 379 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 379 - -
Gma18g01607 379 SUPERFAMILY RING/U-box 260 335 - -
Gma18g01607 379 Pfam U-box domain 260 330 IPR003613 GO:0004842|GO:0016567
Gma18g01607 379 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01607 Gma-Chr18 44865106 44870817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01607 5 379 U-box Gene Family AT3G46510 38.522 1.83e-87 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01607 - - gmx:121172605 748.814