Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01606 ATGCTGATTGCTGAAGCGGGTGCTATACCCCACCTTGTTGATCTCCTCTATGCACCTGATGCTGGCACCCAAGAGCATGTAGTTACTGCTCTCCTGAACTTGTCTATCAATGTGGATAATAAAGAGCGCATCATGGCTTCAGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGTATGGAAGCTCAGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGGGGTGGATGAGAACAGAGTGGCAATTGGTGCGTCTGGAGCAATCCCAGCATTAGTTACTCTATTTTGTGAGGGAAGTCAAAGAGGGAAGGTGGATGCCGCAAAAGCACTATTCAATCTGTGTTTATCCCAAGGGAACAAAGGACGAGCAATTAGGGCTGGTATTGTCCCTAAGTTGATAGAAATGCTAACAGAACCTGATGGGGATATGAGGGATGAGGCAATGACAATAATGGCTGTAGTGGCTAACCATTCTGATGGACAAGCAGCAATTGGATCTATGAATGTTGTATCCACTTTGGTGGAATTAGTCAGTAACGGATCTCCTGGGAACAAAGAGAATGCAACTTCAGTGTTGCTTCTCCTATGTAATGGAGACCCTTTTTATTTGTCCATTGTCAGTTCACTTGGGTTGGTCAATCCTCTCTTGGACCTGGCAGGAAATGGTTCAGAAAGGGCCAAGCGGAAAGCTTCCCAGCTTCTAGAGTTGATAGGAAACCATTGA 732 0.4604 MLIAEAGAIPHLVDLLYAPDAGTQEHVVTALLNLSINVDNKERIMASEAVPGILHVLENGSMEAQENAAATFFSLSGVDENRVAIGASGAIPALVTLFCEGSQRGKVDAAKALFNLCLSQGNKGRAIRAGIVPKLIEMLTEPDGDMRDEAMTIMAVVANHSDGQAAIGSMNVVSTLVELVSNGSPGNKENATSVLLLLCNGDPFYLSIVSSLGLVNPLLDLAGNGSERAKRKASQLLELIGNH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01606 243 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 7 49 IPR000225 GO:0005515
Gma18g01606 243 Gene3D - 85 243 IPR011989 -
Gma18g01606 243 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 240 - -
Gma18g01606 243 SUPERFAMILY ARM repeat 2 240 IPR016024 -
Gma18g01606 243 PANTHER U BOX DOMAIN-CONTAINING 1 240 - -
Gma18g01606 243 Gene3D - 1 84 IPR011989 -
Gma18g01606 243 Pfam Armadillo/beta-catenin-like repeat 2 35 IPR000225 GO:0005515
Gma18g01606 243 Pfam Armadillo/beta-catenin-like repeat 79 117 IPR000225 GO:0005515
Gma18g01606 243 SMART arm_5 160 200 IPR000225 GO:0005515
Gma18g01606 243 SMART arm_5 1 36 IPR000225 GO:0005515
Gma18g01606 243 SMART arm_5 78 118 IPR000225 GO:0005515
Gma18g01606 243 SMART arm_5 119 159 IPR000225 GO:0005515
Gma18g01606 243 SMART arm_5 37 77 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01606 Gma-Chr18 44864344 44865075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01606 3 242 U-box Gene Family AT3G46510 61.250 2.91e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01606 - - gmx:100817998 435.261