Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01600 ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCATCATCACCACCACCTTCTCCATGTTCTTCTCTTTACACTTCTTGTTCCTATTTCCTTTGCTGCAAATGATGAAGTTAGTGCATTGATTTCATGGATGCACAGCTCCTCCAATACAGTTCCTTTAGCTTTTTCTAGTTGGAACCCTTTGGATTCCAATCCTTGCAATTGGTCCTACATCAAATGCTCTTCAGCAAGCCTTGTCACTGAGATAACCATTCAAAATGTTGAGTTAGCCCTTCCCTTCCCTTCAAAAATTTCATCCTTTCCTTTCCTTCAAAAATTGGTCATTTCAGGGGCTAACCTCACTGGAGTTATCTCAATTGATATTGGAATCTGCCTTGAGCTTGTAGTCCTTGACCTTAGCTCAAATAGTCTTGTGGGGGGCATTCCTTCAAGTATTGGGAGGCTCAGAAACCTGCAAAACTTCAGCTTGAACTCTAACCATCTCACTGGACAAATCCCAAGTGAGATTGGTGATTGTGTCAATCTCAAGACCCTTGACATCTTTGATAACAATCTTAATGGGGATCTTCCTGTGGAACTAGGAAAGCTGTCAAATCTGGAGGTTATAAGAGCAGGAGGGAACAGTGGCATTGCAGGGAATATTCCAGATGAACTTGGCGATTGCAAGAATTTGTCAGTGTTAGGTCTGGCTGACACTAAAATTTCTGGCTCATTGCCTGCTTCACTGGGTAAGTTAAGCATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGCTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATGGTCTCTCTGGCTCCCTGCCAAGAGAGATTGGTAAGCTTCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAATAGTTTTGTTGGGGGCATTCCTGAGGAAATTGGCAACTGTAGAAGCTTGAAGATTCTTGATGTCTCCTTGAATTCTATCTCTGGTGGAATACCTCAGAGTTTGGGGAAGCTCTCAAATCTTGAGGAGCTTATGCTGAGTAACAATAACATCTCTGGTTCAATACCAAAAGCTCTTTCCAATCTCACAAACCTCATACAGTTGCAGTTGGATACAAATCAGCTATCAGGTTCGATTCCACCTGAGCTTGGAAGCTTGACAAAGCTAACAATGTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCAACATTGGAAGGTTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCCTGTTTAAGCTTCAAAATTTGACAAAGCTTCTGCTAATCTCTAATGATATTTCTGGCCCCATCCCTCCTGAGATTGGAAAATGCAGTTCCCTCATTCGCCTCCGGCTTGTAGACAACAGAATCAGTGGGGAGATACCGAAAGAAATCGGCTTCCTCAATAGCCTCAATTTCCTTGATCTGTCTGAGAATCACCTTACTGGGTCAGTACCACTTGAGATAGGAAACTGTAAAGAATTGCAAATGCTGAATCTAAGTAATAACTCCCTTTCTGGTGCTTTGCCCAGTTATTTGTCTTCTCTCACAAGGCTGGACGTATTGGATCTTTCTATGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGAGTCATCCTAAGCAAAAACTCTTTTTCTGGGCCAATTCCCTCCTCACTTGGGCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACAAATTCTCAGGGACCATCCCACCAGAACTGCTTCAAATTGAAGCACTTGATATTTCTCTAAATTTTAGTCATAATGCATTATCTGGAGTGGTCCCACCAGAGATTTCTTCTCTGAACAAACTGTCAGTTCTAGACCTTTCACACAACAACCTTGAAGGTGACTTGATGGCTTTTTCGGGGCTCGAGAATCTTGTTTCTCTGAACATTTCCTTCAACAAGTTCACAGGTTATCTGCCAGACAGCAAGTTATTCCACCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCAAATGGTCATGATTCATGTTTTGTTAGCAATGCTGTAATGACGAAAATGATAAATGGCACTAATTCGAAGAGGTCAGAGATAATCAAACTGGCCATTGGATTGCTCAGTGCCTTGGTTGTTGCAATGGCAATCTTCGGAGCTGTTAAAGTCTTTCGAGCAAGGAAAATGATTCAAGCAGACAAATATTCTGAGGTGGGAGGGGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAATTTCTCTGTGGAACAAGTGTTCAAGTGTTTGGTGGAATCCAATGTGATAGGAAAGGGGTGTTCAGGGATTGTTTATCGCGCTGAAATGGAAAATGGGGATATCATTGCTGTGAAAAGGCTATGGCCAACAACATCGGCTGCAAGATATGATAGTCAAAGTGACAAGTTAGCAGTCAATGGAGGGGTACGCGATTCCTTTTCAGCCGAGGTAAAAACTCTTGGTTCGATCCGCCACAAGAACATTGTAAGATTCTTGGGTTGCTGTTGGAACAGAAACACAAGATTGCTTATGTATGATTACATGCCAAATGGGAGTCTAGGAAGTCTGCTTCATGAACAAAGTGGAAACTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCTCAAGGTGTTGCTTATTTGCACCATGACTGTGCTCCTCCCATTGTTCACAGGGATATTAAGGCCAACAATATCCTCATAGGCCCTGAATTTGAACCATACATTGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCTCGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGATACATGATGAAGATAACAGAGAAAAGTGATGTTTATAGCTATGGTATTGTTGTATTAGAGGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCACATTGTTGATTGGGTAAGACATAAAAGAGGTGGAGTTGAAGTGCTAGATGAAAGCTTGCGAGCTCGGCCGGAATCCGAAATTGAGGAGATGTTGCAGACCTTAGGTGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCGACCATGAAAGATGTGGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTAATGCATCTTCTGCAAATGAGCAACAAGAAAGAAATCATCTCACTGAAGAACCAATGTCAATGATAAGCACCAGCAGCACAAATCTGCATCTGCATTACTCTCCCCATCGCCCTCAAACACCAAAGTAA 3459 0.427 MLVVEFLRELPMSMPRQALSNQNHNQMSRQAFITNHHHHHHHHLLHVLLFTLLVPISFAANDEVSALISWMHSSSNTVPLAFSSWNPLDSNPCNWSYIKCSSASLVTEITIQNVELALPFPSKISSFPFLQKLVISGANLTGVISIDIGICLELVVLDLSSNSLVGGIPSSIGRLRNLQNFSLNSNHLTGQIPSEIGDCVNLKTLDIFDNNLNGDLPVELGKLSNLEVIRAGGNSGIAGNIPDELGDCKNLSVLGLADTKISGSLPASLGKLSMLQTLSIYSTMLSGEIPPEIGNCSELVNLFLYENGLSGSLPREIGKLQKLEKMLLWQNSFVGGIPEEIGNCRSLKILDVSLNSISGGIPQSLGKLSNLEELMLSNNNISGSIPKALSNLTNLIQLQLDTNQLSGSIPPELGSLTKLTMFFAWQNKLEGGIPSTLEGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGKCSSLIRLRLVDNRISGEIPKEIGFLNSLNFLDLSENHLTGSVPLEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLDVLDLSMNNFSGEVPMSIGQLTSLLRVILSKNSFSGPIPSSLGQCSGLQLLDLSSNKFSGTIPPELLQIEALDISLNFSHNALSGVVPPEISSLNKLSVLDLSHNNLEGDLMAFSGLENLVSLNISFNKFTGYLPDSKLFHQLSATDLAGNQGLCPNGHDSCFVSNAVMTKMINGTNSKRSEIIKLAIGLLSALVVAMAIFGAVKVFRARKMIQADKYSEVGGDSWPWQFTPFQKVNFSVEQVFKCLVESNVIGKGCSGIVYRAEMENGDIIAVKRLWPTTSAARYDSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHEQSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRHKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLNASSANEQQERNHLTEEPMSMISTSSTNLHLHYSPHRPQTPK 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01600 1152 Gene3D Ribonuclease Inhibitor 553 638 IPR032675 -
Gma18g01600 1152 Gene3D Ribonuclease Inhibitor 639 725 IPR032675 -
Gma18g01600 1152 SUPERFAMILY RNI-like 236 526 - -
Gma18g01600 1152 Gene3D Ribonuclease Inhibitor 222 357 IPR032675 -
Gma18g01600 1152 SMART LRR_typ_2 512 536 IPR003591 -
Gma18g01600 1152 SMART LRR_typ_2 680 705 IPR003591 -
Gma18g01600 1152 SMART LRR_typ_2 440 464 IPR003591 -
Gma18g01600 1152 SMART LRR_typ_2 392 416 IPR003591 -
Gma18g01600 1152 SMART LRR_typ_2 175 199 IPR003591 -
Gma18g01600 1152 SMART LRR_typ_2 584 608 IPR003591 -
Gma18g01600 1152 SMART LRR_typ_2 368 391 IPR003591 -
Gma18g01600 1152 SMART LRR_typ_2 657 679 IPR003591 -
Gma18g01600 1152 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 28 1115 - -
Gma18g01600 1152 ProSiteProfiles Protein kinase domain profile. 810 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01600 1152 ProSiteProfiles Leucine-rich repeat profile. 659 681 IPR001611 GO:0005515
Gma18g01600 1152 SUPERFAMILY Protein kinase-like (PK-like) 793 1093 IPR011009 -
Gma18g01600 1152 SUPERFAMILY L domain-like 458 718 - -
Gma18g01600 1152 SUPERFAMILY L domain-like 84 290 - -
Gma18g01600 1152 SMART serkin_6 810 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01600 1152 SMART LRR_sd22_2 368 394 - -
Gma18g01600 1152 SMART LRR_sd22_2 416 448 - -
Gma18g01600 1152 SMART LRR_sd22_2 199 228 - -
Gma18g01600 1152 SMART LRR_sd22_2 657 682 - -
Gma18g01600 1152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672|GO:0006468
Gma18g01600 1152 ProSiteProfiles Leucine-rich repeat profile. 370 393 IPR001611 GO:0005515
Gma18g01600 1152 Pfam Leucine rich repeat N-terminal domain 60 101 IPR013210 -
Gma18g01600 1152 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 28 1115 - -
Gma18g01600 1152 Gene3D Phosphorylase Kinase; domain 1 794 900 - -
Gma18g01600 1152 Gene3D Ribonuclease Inhibitor 59 219 IPR032675 -
Gma18g01600 1152 Gene3D Ribonuclease Inhibitor 457 552 IPR032675 -
Gma18g01600 1152 Gene3D Ribonuclease Inhibitor 358 456 IPR032675 -
Gma18g01600 1152 PRINTS Leucine-rich repeat signature 515 528 - -
Gma18g01600 1152 PRINTS Leucine-rich repeat signature 657 670 - -
Gma18g01600 1152 Pfam Protein tyrosine and serine/threonine kinase 813 1091 IPR001245 GO:0004672|GO:0006468
Gma18g01600 1152 ProSitePatterns Protein kinases ATP-binding region signature. 816 838 IPR017441 GO:0005524
Gma18g01600 1152 Gene3D Transferase(Phosphotransferase) domain 1 901 1118 - -
Gma18g01600 1152 Pfam Leucine rich repeat 345 405 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01600 Gma-Chr18 44606937 44610802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01600 58 1144 Receptor kinase-like Gene Family AT5G56040 47.187 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma18g01600 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01600 - - gmx:100815339 2181.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01600 18 44606937 44610802 Gma08g03283 08 49596508 49600450 GST