Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma18g01557 | ATGGAGAACAACGCATTCAGAGATCGAATCTTGGAGGACAATGAACACGAAGAAATCCCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTCTGCGGGAGTCTCAATGTCCAGTATGTAGGAATCAATATTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTACTTCTCAAGATCTATACCGCTGCTTACAAGAGAAGGGAAAACCAAACTCTTGAGGAAGAAAAGCAATCAGGATTCTACTCCCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGGTCAGCTGCCAATGAAGGAGATGATGGCACCATCTATTATGATGGAGAGTCTGATATTATTGGAACTCCTGCTAAAGGAAAAAAAATGCCTCAGGAAGAGCTTTCTGTACAAAGGAAATTATCAGTTGCAGATGTGACTTGTACGATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTGTACTGTCAAACTTGTGTCATCAACATAGATGACGAGATGCTCAGATGTAAAGTTTGTCAAAGTCCACATCCTAGAGGATTACCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAGCGGAGAGATGCCATTGAACTAAAGCAAATCAAAGTCAAACCCGACACCCCTTCTTCTTGTTCATTGGATAATGGTAAAAGAGTAGAAAATATAGATTGGTGGTCTGATCCTGACCCAAAAGTTCACATTGGAGTTGGTTGCGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGCATTGACTGTAAGGAGAAGATGGGCTTTGATCTTTGTGGTGATTGCTACGCAAGCCGCTCGAAGCTTCCCGGTCGATTTAATCAACAACACACCTCAGAGCATAAGTTCAAGCTTGTACCACCGAACATTATTCATAACATGATGTTGAGGCTGGCCACAGCACAGTTAGGAGAAGGTTCTATTGACCTGGAGTCTATAGCAAACATAGAAGTTACTTCAGATGGTGCCGCTTTGTTTGATGATGGAGAAGATAACCACAATGATTCTGAAGCCACCAATTGA | 1185 | 0.4093 | MENNAFRDRILEDNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRNQYYHFPTVCQLLHFLLLKIYTAAYKRRENQTLEEEKQSGFYSPQFDPDTCESQAKFGHSGSAANEGDDGTIYYDGESDIIGTPAKGKKMPQEELSVQRKLSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVINIDDEMLRCKVCQSPHPRGLPKVCLELDHFLEEQFPEEYGQRRDAIELKQIKVKPDTPSSCSLDNGKRVENIDWWSDPDPKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDLCGDCYASRSKLPGRFNQQHTSEHKFKLVPPNIIHNMMLRLATAQLGEGSIDLESIANIEVTSDGAALFDDGEDNHNDSEATN | 394 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma18g01557 | 394 | Gene3D | - | 276 | 340 | IPR043145 | - | |
| Gma18g01557 | 394 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 129 | IPR013083 | - | |
| Gma18g01557 | 394 | ProSiteProfiles | Zinc finger ZZ-type profile. | 281 | 345 | IPR000433 | GO:0008270 | |
| Gma18g01557 | 394 | ProSiteProfiles | Zinc finger RING-type profile. | 25 | 65 | IPR001841 | - | |
| Gma18g01557 | 394 | CDD | RING-HC | 25 | 64 | - | - | |
| Gma18g01557 | 394 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE | 158 | 378 | - | - | |
| Gma18g01557 | 394 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE | 12 | 120 | - | - | |
| Gma18g01557 | 394 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 255 | IPR013083 | - | |
| Gma18g01557 | 394 | SUPERFAMILY | RING/U-box | 17 | 74 | - | - | |
| Gma18g01557 | 394 | PANTHER | UNCHARACTERIZED | 12 | 120 | - | - | |
| Gma18g01557 | 394 | PANTHER | UNCHARACTERIZED | 158 | 378 | - | - | |
| Gma18g01557 | 394 | Pfam | RING-type zinc-finger | 173 | 197 | IPR027370 | - | |
| Gma18g01557 | 394 | ProSitePatterns | Zinc finger RING-type signature. | 188 | 197 | IPR017907 | - | |
| Gma18g01557 | 394 | SUPERFAMILY | RING/U-box | 274 | 340 | - | - | |
| Gma18g01557 | 394 | Pfam | Zinc finger, ZZ type | 282 | 321 | IPR000433 | GO:0008270 | |
| Gma18g01557 | 394 | SUPERFAMILY | RING/U-box | 168 | 214 | - | - | |
| Gma18g01557 | 394 | ProSiteProfiles | Zinc finger RING-type profile. | 173 | 211 | IPR001841 | - | |
| Gma18g01557 | 394 | SMART | ring_2 | 25 | 64 | IPR001841 | - | |
| Gma18g01557 | 394 | SMART | ring_2 | 173 | 210 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma18g01557 | Gma-Chr18 | 43187366 | 43194498 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma18g01557 | 23 | 102 | C3H Transcription Factor Family | AT2G42030 | 31.250 | 2.26e-07 | 50.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma18g01557 | - | - | gmx:100787174 | 830.476 |