Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01554 ATGAAGTCCACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTGATGAAAAGAAAATTACATGCTGCTGCAAAAGCTTTTGTTACAGAAGGAAAAGTTTCCACGGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTCTATGAGTGGTGGTCTGTGTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAACAAAAGCTAGAGAACAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAACGCAGTGCACAATTACAGCGAAGAGATCCTAATCATCCATCCCTTGGTGGTTCCATAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCCACCTGCAAGTGTGTTGGCAATGAAAATGTATGAAGAGCGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATCCCAATAGAATGGCCTTACTCAAATCTGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCCACTGCATTGCAGCAAGGGCGGGCTCCTTTAACCACTGACATCAAAGGAGAAGTTAATTTAGGCGCCACTCCAAAGAGTTTGCCTATGGATACATCGGTTTATCGACAAGCAATTTTACATTCAAAATCTGGACTTGGCAGTGCAGGATTAAATCAAGGAGTTACAGGTCTTCCGTTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGACCTAATTTGGGTGTCCAAATTCCGAAGCCCAATTTGACAGCCCAGAATCAATTTGTTTTGGCATCACAACAGCAACAGGTCTTGGCACAGGCTCAGGCACAAAATAACCTTGGAAATTCTAATTATGGTGACATGGATCCTCGTAGACTTTCTGGTCTTCCACGAGGTAGCTTAAGTGCAAAGGATGGTCAGTCTACTAGAAATGATGGATCTATTTGCTCCCAAATGCAGTCAGATTCACCTAAGATGAAGATTGCTCAGTCACAACATTCATTATCTCAACAGCAGGAGCAATTACAGCAGCAGAGTAACAGAAAAAGAAAATCTGGAGCTGCCAATAGCACTGGTACAGGTAACACTGCTGCTCCTTCCCCTACTTCATCACCATCAACACATACACCTGGTGATGGATTAAATACAGCAAGCAGCATGCAGCATGTCCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCGTCGAATTTGCTGGACGACATGGATCGATTTGGAGATGTTGATGCTTTAGATGATAATGTTGAATCCTTTCTATCAAATGATGGCGGAGATGGTGGGAATCTCTATGGAACAGTGAAACAAAGTCCAGCTGAGCAACAGAAAGAGTCTTCTAAAGGTTTCACCTTTGCTGAAGTTGGTTGCAGAAGAACAAGGAACAGCAAAGTTACTTGTTGTCACTTTTCTTCAGATGGAAAGTGGCTAGCCAGTGCTGGAGATGACATGAAGGTTGACATCTGGAACATGGACACTTTAGAAACAGAGAGCACTCCTGCAGAACACAAATCAGTTATTACAGATGTCCGTTTTAGACCTAATTCATCTCAGTTGGCGACTGCTTCAACTGATAAATCTGTGCGGTTATGGGACACAACCAATCCAAGCCGTTGTCTGCAAGAATATAGTGGGCATTCATCAGCTATAATGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGTGATGGTGAGAATGAAATTCGGTATTGGAATATTAATTCATCCACCTGCACCCGTGTAACTAAGGGAGTTAGTGCACAAGTCAGGTTTCAGCCTAGACTGGGACGTTACCTGGCAGCAGCTTCTGATAAAGGGGTGTCAATTTTTGATGTTGAATCTGATACACAAATTTACACCCTCCAGGGACATCCTGAACCGGTGAGCTATATTTGCTGGGATGGCAATGGTGATGCCTTGGCATCTGTGAGTTCAAATTTGGTGAAGGTTTGGAGTTTGACCTCAGGAGGAGAATGCATTCATGAGTTCAGCTCCCCTGGGAACCAATTTCATTCCTGTGTTTTCCATCCAAGTTATTCAACTTTGTTGGTGGTTGGAGGAATTTCATCCTTGGAGTTATGGAACATGACAGAGAACAAAAGCATGACAATTACTACACATGAAAATGTAATATCTGCTTTGGCTCAGTCTTCTGTCACTGGAATGGTTGCCTCTGCAAGTCATGACAACTATGTAAAGCTGTGGAAATAA 2325 0.4262 MKSTMAQNQSNWEADKMLDVYIYDYLMKRKLHAAAKAFVTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAREQQLQMQQLQLMQQRSAQLQRRDPNHPSLGGSINAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPTLIDPNRMALLKSAASHQGQLVHGNSGNMSTALQQGRAPLTTDIKGEVNLGATPKSLPMDTSVYRQAILHSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQIPKPNLTAQNQFVLASQQQQVLAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLSAKDGQSTRNDGSICSQMQSDSPKMKIAQSQHSLSQQQEQLQQQSNRKRKSGAANSTGTGNTAAPSPTSSPSTHTPGDGLNTASSMQHVQKSMMMYGTEATGGLASSSNLLDDMDRFGDVDALDDNVESFLSNDGGDGGNLYGTVKQSPAEQQKESSKGFTFAEVGCRRTRNSKVTCCHFSSDGKWLASAGDDMKVDIWNMDTLETESTPAEHKSVITDVRFRPNSSQLATASTDKSVRLWDTTNPSRCLQEYSGHSSAIMSLDFHPKKTELFCFCDGENEIRYWNINSSTCTRVTKGVSAQVRFQPRLGRYLAAASDKGVSIFDVESDTQIYTLQGHPEPVSYICWDGNGDALASVSSNLVKVWSLTSGGECIHEFSSPGNQFHSCVFHPSYSTLLVVGGISSLELWNMTENKSMTITTHENVISALAQSSVTGMVASASHDNYVKLWK 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01554 774 Coils Coil 85 105 - -
Gma18g01554 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 566 IPR001680 GO:0005515
Gma18g01554 774 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 566 - -
Gma18g01554 774 Coils Coil 351 371 - -
Gma18g01554 774 Gene3D - 491 624 IPR015943 GO:0005515
Gma18g01554 774 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Gma18g01554 774 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 774 - -
Gma18g01554 774 SMART WD40_4 485 524 IPR001680 GO:0005515
Gma18g01554 774 SMART WD40_4 527 566 IPR001680 GO:0005515
Gma18g01554 774 SMART WD40_4 570 610 IPR001680 GO:0005515
Gma18g01554 774 SMART WD40_4 735 774 IPR001680 GO:0005515
Gma18g01554 774 SMART WD40_4 652 690 IPR001680 GO:0005515
Gma18g01554 774 SMART WD40_4 613 649 IPR001680 GO:0005515
Gma18g01554 774 SMART WD40_4 694 733 IPR001680 GO:0005515
Gma18g01554 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 742 774 IPR001680 GO:0005515
Gma18g01554 774 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 527 - -
Gma18g01554 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 619 IPR001680 GO:0005515
Gma18g01554 774 SMART Lish 14 46 IPR006594 GO:0005515
Gma18g01554 774 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 774 IPR044716 GO:0003714
Gma18g01554 774 MobiDBLite consensus disorder prediction 324 407 - -
Gma18g01554 774 Pfam LisH 16 41 IPR006594 GO:0005515
Gma18g01554 774 MobiDBLite consensus disorder prediction 304 407 - -
Gma18g01554 774 PRINTS G protein beta WD-40 repeat signature 511 525 IPR020472 -
Gma18g01554 774 PRINTS G protein beta WD-40 repeat signature 553 567 IPR020472 -
Gma18g01554 774 PRINTS G protein beta WD-40 repeat signature 761 774 IPR020472 -
Gma18g01554 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 533 IPR001680 GO:0005515
Gma18g01554 774 CDD WD40 496 774 - -
Gma18g01554 774 Pfam WD domain, G-beta repeat 655 690 IPR001680 GO:0005515
Gma18g01554 774 Pfam WD domain, G-beta repeat 536 566 IPR001680 GO:0005515
Gma18g01554 774 Pfam WD domain, G-beta repeat 497 524 IPR001680 GO:0005515
Gma18g01554 774 Pfam WD domain, G-beta repeat 572 610 IPR001680 GO:0005515
Gma18g01554 774 Pfam WD domain, G-beta repeat 740 774 IPR001680 GO:0005515
Gma18g01554 774 Gene3D - 625 774 IPR015943 GO:0005515
Gma18g01554 774 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 742 774 - -
Gma18g01554 774 SUPERFAMILY WD40 repeat-like 493 774 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01554 Gma-Chr18 43087230 43096750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01554 574 773 Miscellaneous Gene Families AT5G08390 24.272 4.29e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gma18g01554 WD40 0.025 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01554 - - gmx:100799686 1457.97