Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01486 ATGGCTAGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAAGAAGGCCAACGAGCTCACCATTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGAAAACTCCACAAGATCGAGCAATCAACAAAGCAGTTCTTCGATCAATACCAGATGACTCTAGGAGTTGATATTTGGAACTCTCATTACGAGAGAATGGGAGATTGTCTGAATGAGCTGGGCATGGAAGATCTCAGGCTCCTTGAGGAAGGAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGCTTAGAGAACTAGTACTACAGGATATTGGTACTTATGACTTGCCAGTTGAAGAATGCCACTATTGCTGTCGATGCCTTGTCTGTATGATTCTTGTTGCTTTGACAGGTGAAAAAGGGAAGTTTGATGAGTTGCTTGAGGATAAGGGTGTTAATATATTGATTGATCCAAAGGCCCTTATGAATGTCATTGGAACTAAAATGGATTTTGTAGATGACAAACTAAGATGTGTGGCACATATGTCAACTCCTGTTATATGTTCTGTAACAGACATTTTCAGCTTATTAAAATTTGTTGGCGGGCCATACGTTCGACTCATTGACCTCAGTGAAGCTTACAAAATTTGGAAGGTTGATAAGATAGACTTTCTTGCATGCGCTGGAGCATTCTTTGGAGTACTGTTTGCTTCTGTGGAGATTGGTCTACTTGCTGCGGCTTTTCTTCCGATAGATTTGGTGAACATTGACACTGCTGGAATCACTGCTCTAGAGGAACTGCATAAAAGTTTGTCTTCACATGGAAAACAGTCTCAAATGCGGATAGCAATTTGGTGCAATTTGGCTATTCAGGTTAGCTTCCTCCTCAAGATGCTGCCTTAG 897 0.4225 MARGKIQIKRIENTTKKANELTILCDAKVSIIMFSSTGKLHKIEQSTKQFFDQYQMTLGVDIWNSHYERMGDCLNELGMEDLRLLEEGMDKAAKVVRERKLRELVLQDIGTYDLPVEECHYCCRCLVCMILVALTGEKGKFDELLEDKGVNILIDPKALMNVIGTKMDFVDDKLRCVAHMSTPVICSVTDIFSLLKFVGGPYVRLIDLSEAYKIWKVDKIDFLACAGAFFGVLFASVEIGLLAAAFLPIDLVNIDTAGITALEELHKSLSSHGKQSQMRIAIWCNLAIQVSFLLKMLP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01486 298 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Gma18g01486 298 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Gma18g01486 298 Gene3D - 8 69 IPR036879 GO:0003677|GO:0046983
Gma18g01486 298 PANTHER APETALA3 1 70 - -
Gma18g01486 298 PRINTS MADS domain signature 9 24 IPR002100 GO:0003677|GO:0046983
Gma18g01486 298 PRINTS MADS domain signature 24 45 IPR002100 GO:0003677|GO:0046983
Gma18g01486 298 SMART madsneu2 1 46 IPR002100 GO:0003677|GO:0046983
Gma18g01486 298 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 41 IPR002100 GO:0003677|GO:0046983
Gma18g01486 298 SUPERFAMILY HesB-like domain 132 174 IPR035903 -
Gma18g01486 298 PANTHER SERUM RESPONSE FACTOR HOMOLOG 69 118 - -
Gma18g01486 298 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 70 - -
Gma18g01486 298 PANTHER APETALA3 69 118 - -
Gma18g01486 298 Gene3D - 120 182 IPR035903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01486 Gma-Chr18 38866497 38873910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01486 1 104 MADS-box Gene Family AT3G54340 44.755 1.05e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma18g01486 SRF-TF 8.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01486 K09264 - gmx:547720 160.999