LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g01475	ATGTTGCATAAGAAGAAGAATGGCAGTGAAAACGGCAACAACAAGGAGAACGAAGACACCACCATCACCGATGTCTTGAAGGTCGAAGTGCACTACGAAGAAAGCTTTTATTTTGATGATAAGTTTAGATATCCTGAGAATTCTGCTCATGGTCAACTCCCAAGAACAGTGGATGTAATTGCAGAAGACGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGGATATATAAGGCTCTTGCAAGGAAAAGGACTGTTCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGATAATGCACCAATCTACAGTGTTGAAGATGTCAAAAACATTAAAGAGATAGCTACAAGAGATGATGCATTTGATCTGCTAAGTGATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGCGGGGTGGAGAAGAATTTAAAGAATGGCACTCACTTGCGAGGGTTAGAGTTTTCTCTTGATCTCCTTTCTTTACTCAATCCCACAAAATTTTTAGGGAACATTGTGGTTGAACATGATTATGCTGAGTGCACTGGATCTGCTATTCAAGCTTTAGTTTTGTTTAAGAAGCTATATCCAAGGCATAGGGAGACAGAGATAAAGAATTCCATTGCCAATGCAGTTCATGGTATGGAAGTTGGGGAGTTTGCTACATTTATGGCACTTGGTTTGCACTTCGTGGTCTTGCAGCGGCGAGTAAAACTTACACTAATTGTGCTGCCATTCGCAAAACCATTAAATTTCTACTTTCAACACTGA	816	0.4032	MLHKKKNGSENGNNKENEDTTITDVLKVEVHYEESFYFDDKFRYPENSAHGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALARKRTVLIANNVSLLNKEDNAPIYSVEDVKNIKEIATRDDAFDLLSDSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGLEFSLDLLSLLNPTKFLGNIVVEHDYAECTGSAIQALVLFKKLYPRHRETEIKNSIANAVHGMEVGEFATFMALGLHFVVLQRRVKLTLIVLPFAKPLNFYFQH	271

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g01475	271	ProSiteProfiles	MCM family domain profile.	125	167	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Gma18g01475	271	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	172	227	IPR008930	-
	Gma18g01475	271	Gene3D	-	107	168	IPR027417	-
	Gma18g01475	271	MobiDBLite	consensus disorder prediction	1	20	-	-
	Gma18g01475	271	SMART	mcm	4	264	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Gma18g01475	271	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	44	167	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Gma18g01475	271	PANTHER	DNA HELICASE	44	167	-	-
	Gma18g01475	271	SUPERFAMILY	Nucleic acid-binding proteins	45	86	IPR012340	-
	Gma18g01475	271	Gene3D	-	17	103	IPR012340	-
	Gma18g01475	271	Pfam	MCM OB domain	45	83	IPR033762	-
	Gma18g01475	271	Pfam	MCM P-loop domain	112	167	IPR001208	GO:0003677\|GO:0005524\|GO:0032508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g01475	Gma-Chr18	38614114	38616356	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma18g01475	45	167	Core DNA Replication Machinery Family	AT5G46280	75.758	9.16e-63	205

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g01475	K02541		-	gmx:100811545	210.305