Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01434 ATGGAAAACCAATTCTTTCTCAATGCTGGTGTGCCCCCTCAGCTGCATTTTGAGCCTTCACCACACGGTCACCAACCTTGTCCACCACCCTCTTGGCAATCATCACTGTCTTCTGCCATGGATGTTCAAGTCACCGTTTTGAATTGTTCAACTGAGCAGACCCAGGATTGCTTCTACAACACCACCCCAACATGGGACAAGTCAACGGATCATGGCCTTCAGTTTGATTCAGCTCTGAGTTCAATGGTGTCCTCTCCTGCAGCCTCCAATTCCAACATATCAAGTGAGAATTTTGTCATCAGGGAATTGATAGGAAAATTGGGAAACATTGGTGGTGGTGGTGGTTCAGATGAGATCTCACCTCATTCTCAGCCTTTGGTTGGTGCATCTTTCTACATCAATTGCAATAATAATAGCACCAACACTTCATGTTATAGCACCCCTTTGAGTTCTCCTCCAAAGGTGAACACGATCAAGATCCCCACAATGGTGAACCACTTGGTGAAGGAGGGCATGCCCCCAAGTTTGGAGACACCAATGTCCTTGAATTCCACTGTGGCTAAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCATGCTTTGGAAGTCGGAGTTTGAATGGCAGGACCACCCAATTGGGACTCAACAATGCTGAATTGGCTCAGAGATCTTCATTGGTGGAAAATGGGAAGCGGCTCCCTAGAGTCTCAAGTAGTCCATCACTCAAAGTGCTTGAATCTCAAATGGGTACTCAGGAGAACAAAAATTCTCCATTGCAAGACCTAATGGAATTGGCCAATTCTCAAGAGGAATCCACAATCTCTGAACAGACCCCAAATGGGGACACTGGGGTGAAGCCTTCCCCTTATGTGAATTCTAGGAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAAGAAACTTCAGCCTCTATTAACCCCCCTATGGCTGCTGAAGCTAGTGAAGACTGGAATGCGAAACGCAGCAAGCCTAATGCCGGTGAGGGGAATGAAAATGGCCAAGTTAAGGCAGAGGAAGAGTCCAAAGGGGGTAATAGTAATGCAAATGATGAGAAACAGAACAAGAGTAACTCAAAACCTCCTGAACCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGATAGTCATAGTCTTGCAGAAAGAGTTCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACGGGTAAAGCACTAATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCTGATAGATTCCTCAGCACCACCCTTTTATGGGCAACACCCTCAGCCAAACCCAGCAGTCCACAATAACATTCCTAATGGAACTATGACCCACAACTCAGTGGACCCATTAGATACTGGTTTGTGCCAAAACCTTGGCATGCATTTACCACACCTAAATGATTTTAATGAAGGTGGTTCTCAGTATGCAAAACCATTCTCTGAAGATGACCTCCACACCATTATTCAGATGGGATTTGGCCAAAATGCAAATAGGATAACACCAATACAATCTCAGAGTTTCAACGGCTCAAATCAAGTACCCCTATGA 1743 0.4423 MENQFFLNAGVPPQLHFEPSPHGHQPCPPPSWQSSLSSAMDVQVTVLNCSTEQTQDCFYNTTPTWDKSTDHGLQFDSALSSMVSSPAASNSNISSENFVIRELIGKLGNIGGGGGSDEISPHSQPLVGASFYINCNNNSTNTSCYSTPLSSPPKVNTIKIPTMVNHLVKEGMPPSLETPMSLNSTVAKFSADPGFAERAAKFSCFGSRSLNGRTTQLGLNNAELAQRSSLVENGKRLPRVSSSPSLKVLESQMGTQENKNSPLQDLMELANSQEESTISEQTPNGDTGVKPSPYVNSRKRKGPSKGKAKETSASINPPMAAEASEDWNAKRSKPNAGEGNENGQVKAEEESKGGNSNANDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFLIDSSAPPFYGQHPQPNPAVHNNIPNGTMTHNSVDPLDTGLCQNLGMHLPHLNDFNEGGSQYAKPFSEDDLHTIIQMGFGQNANRITPIQSQSFNGSNQVPL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01434 580 Coils Coil 433 453 - -
Gma18g01434 580 CDD bHLH_AtBPE_like 376 461 - -
Gma18g01434 580 MobiDBLite consensus disorder prediction 233 377 - -
Gma18g01434 580 Gene3D - 383 458 IPR036638 GO:0046983
Gma18g01434 580 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 386 436 IPR011598 GO:0046983
Gma18g01434 580 PANTHER BHLH TRANSCRIPTION FACTOR 2 577 - -
Gma18g01434 580 MobiDBLite consensus disorder prediction 12 35 - -
Gma18g01434 580 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 577 IPR024097 GO:0006355
Gma18g01434 580 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 455 IPR036638 GO:0046983
Gma18g01434 580 MobiDBLite consensus disorder prediction 235 291 - -
Gma18g01434 580 Pfam Helix-loop-helix DNA-binding domain 390 437 IPR011598 GO:0046983
Gma18g01434 580 SMART finulus 392 442 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01434 Gma-Chr18 36745692 36748158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01434 1 544 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.599 1.94e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma18g01434 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01434 - - gmx:100787699 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01434 18 36745692 36748158 Gma08g03195 08 48702810 48705892 GST
Gma18g01434 18 36745692 36748158 Gma03g00793 03 28874000 28877738 PCT
Gma18g01434 18 36745692 36748158 Gma16g00776 16 11112404 11115976 PCT
Gma03g00793 03 28874000 28877738 Gma18g01434 18 36745692 36748158 PCT
Gma16g00776 16 11112404 11115976 Gma18g01434 18 36745692 36748158 PCT