Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01414 ATGGCCAAGCCTGGGGTGTTGGAGTCTGATCCAGGGGTGATGGTGAAGAAGGCCATAGAGTTGAAGAGAGAGCTTCAGAGGTTGGTGAAGTCCATTGTGGATGATGAGGATTGCAGCACTGAGACCATTGATCAGGCCAAAGAGACTCTCTGTGTTCTCAAGGAGTTGAAGCTCAGAAAGAGGTCTTCACTGTCTCTGAAGCTTCAAAACAAGAGTGTCACTTCTTCTTTCCCTGATGAATTCAAGTGCCCTCTTTCCAAGGAATTGATGAGAGATCCTGTCATTTTGGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGCTAAATGCTGGAAATAGGACTTGCCCTCGGACACATCAAGTCCTTTCACACACTGTGCTTACACCAAATCATCTAATAAGGGAAATGATAGAACAATGGTCTAAAAACCAAGGGATTGAATTTTCAAATACTGTTCAATATATTGACGAGGAAGGTTTAAACAAAGCTGACTGCGAGCATTTTCTTTGTTTGCTTAAGAAAATGTCATCAACACTTTCTGATCAGAAGACGGCTGCAAAAGAACTGCGCTTGTTGACAAAGAAGCATCCTTGTTTCCGGGTACTTTTTTGTGATTCAGCAGACGCCATTCCCCAATTGCTTAAGCCAATTTGTGGGAGTGATTCCTTTGGTAGTGTTCACCCTGATCTACAAGAAGATGTAATCACAACACTCCTCAACATCTCTATTCATGATAACAATAAAAAGCTAGTGGCTGAAACTCCTATGGTAATTCCTCTCCTTATGAGAGCATTGAGATCAGGAACAATTGAAACGAGAAGCAACGCTGCAGCTGCACTTTTCACTTTGTCAGCTCTTGACTCAAACAAGGAACTCATAGGGAAATCTGGAGCCTTGAAGCCGTTAATTGACCTCTTGGAAGAAGGGCATCCCTTAGCTATGAAGGATGTTGCTTCAGCAATTTTTAACATATGTGTAATGCATGAGAACAAGGCAAGAGCCGTGAAGGATGGTGCAGTGAGGGTGATTTTGGCAAAGATAAATAAGCAGATTCATGTTGCTGAGTTACTAGCTATCCTTGCACTGCTTTCAAGTCACCAGAGGGCTGTTCATGACATGGGAGATCTTGGAGCTGTTCCTAGCTTGCTAAGGATCATTAAAGAGAGCTCGTGCGAACGCAACAAGGAGAATTGTGTAGCAATCCTTCAAACCATTTGTCTGTATGATAGATCAAAGTTGAAGGAAATAAGGGAAGAGGAGAACGGCCACAAAACAATCTCTGAGCTAGCAAAAAATGGAACATCTAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGATTGAATAGGGTTGTTCACATCACACACACTGCATAA 1386 0.4242 MAKPGVLESDPGVMVKKAIELKRELQRLVKSIVDDEDCSTETIDQAKETLCVLKELKLRKRSSLSLKLQNKSVTSSFPDEFKCPLSKELMRDPVILASGQTYDRPFIQKWLNAGNRTCPRTHQVLSHTVLTPNHLIREMIEQWSKNQGIEFSNTVQYIDEEGLNKADCEHFLCLLKKMSSTLSDQKTAAKELRLLTKKHPCFRVLFCDSADAIPQLLKPICGSDSFGSVHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFNICVMHENKARAVKDGAVRVILAKINKQIHVAELLAILALLSSHQRAVHDMGDLGAVPSLLRIIKESSCERNKENCVAILQTICLYDRSKLKEIREEENGHKTISELAKNGTSRAKRKASGILERLNRVVHITHTA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01414 461 SMART Ubox_2 80 143 IPR003613 GO:0004842|GO:0016567
Gma18g01414 461 Pfam Armadillo/beta-catenin-like repeat 291 328 IPR000225 GO:0005515
Gma18g01414 461 ProSiteProfiles U-box domain profile. 76 150 IPR003613 GO:0004842|GO:0016567
Gma18g01414 461 CDD RING-Ubox_PUB 81 123 IPR045210 -
Gma18g01414 461 SMART arm_5 197 246 IPR000225 GO:0005515
Gma18g01414 461 SMART arm_5 247 288 IPR000225 GO:0005515
Gma18g01414 461 SMART arm_5 368 410 IPR000225 GO:0005515
Gma18g01414 461 SMART arm_5 289 329 IPR000225 GO:0005515
Gma18g01414 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 459 - -
Gma18g01414 461 Pfam U-box domain 78 147 IPR003613 GO:0004842|GO:0016567
Gma18g01414 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 147 IPR013083 -
Gma18g01414 461 Gene3D - 148 455 IPR011989 -
Gma18g01414 461 PANTHER U BOX DOMAIN-CONTAINING 5 459 - -
Gma18g01414 461 SUPERFAMILY ARM repeat 172 451 IPR016024 -
Gma18g01414 461 SUPERFAMILY RING/U-box 70 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01414 Gma-Chr18 34821548 34824991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01414 139 461 U-box Gene Family AT3G07360 59.940 2.75e-127 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01414 - - gmx:100777031 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01414 18 34821548 34824991 Gma08g03190 08 48649731 48653160 GST