Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01388 ATGATCACCAAGGATGACTCAGACAATCAGAAGAGTAGCAAGTTAGATGGTGAGCAAGATAACATATGTCTGATGGTTGACACAAACAAAAAAGTTGAGATCTTCGTGAAAACCCTAACAGGGAAGACTATAACCTTCAAGGTCGAAAGCAGGGACACCATCGACAATGTCAAGGGCAAGATTCAAGACAAGGAAGATGGAAGGACCTTGGCCGATTACAACATCAAGAAGGAATCAACCTTTCACCTTCTCCTCAAGCTTCGTGGTGGCATCATCAAGCCTTCCTTTATGGCATTGGCTCGCAAATACAACCTAGACAAGATGATTTTCCATAAGTCTGCTGAGTCATTGTTAGGCTACAGTAGCCAATCATGTACCTCGAGGGCCAGAACCTCCCTTGAGAATAGAAAATGGAAAGGCCCTTATGGAAAGAGGAAAATATTCCTAGTGGCAGACAAGATCAAGGAGCTGCCTCTCTGCCAGCCATCTCAGCAGAAACGGTTATACGAAACCTTTGAGGTAAGCTGGGGCCCTGCTCTTCCTCTGTGGTCTTGCTTTTGTTGCCTCTGGTTTTTCTGCATTGCTATCAGTCTATCACGTAGCAATAATTCAATTCAACTTGTTTTGTAG 630 0.4413 MITKDDSDNQKSSKLDGEQDNICLMVDTNKKVEIFVKTLTGKTITFKVESRDTIDNVKGKIQDKEDGRTLADYNIKKESTFHLLLKLRGGIIKPSFMALARKYNLDKMIFHKSAESLLGYSSQSCTSRARTSLENRKWKGPYGKRKIFLVADKIKELPLCQPSQQKRLYETFEVSWGPALPLWSCFCCLWFFCIAISLSRSNNSIQLVL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01388 209 SUPERFAMILY Ubiquitin-like 17 90 IPR029071 -
Gma18g01388 209 ProSiteProfiles Ubiquitin domain profile. 32 64 IPR000626 GO:0005515
Gma18g01388 209 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 33 65 - -
Gma18g01388 209 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 65 116 - -
Gma18g01388 209 Pfam Ubiquitin family 34 65 IPR000626 GO:0005515
Gma18g01388 209 ProSiteProfiles Ubiquitin domain profile. 65 90 IPR000626 GO:0005515
Gma18g01388 209 Gene3D - 30 65 - -
Gma18g01388 209 SMART ubq_7 32 86 IPR000626 GO:0005515
Gma18g01388 209 Gene3D - 66 107 - -
Gma18g01388 209 PANTHER UBIQUITIN 33 65 - -
Gma18g01388 209 PANTHER UBIQUITIN 65 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01388 Gma-Chr18 29226796 29229781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01388 32 112 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 66.327 5.25e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01388 K02927 - pavi:110749633 125.176