Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01378 ATGATTGCTATTGGGCTAGACATCGCTCAACTAGGCCCAACTAATTTTGTCGAAGAGCCCAGTTGGGGCCCAAGAGTCACAGCCCGGGTTGGTATAAAATCTGAACTTAAAACCCTACTTTCTCCCTACCGTGCGCACGTTCCGAGTTTTCTGATCGCTCATAGAGAGTTCGACGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGTTCAACATCGCGAGTCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCAGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAGCGGAGATGCACTTGGTGAGGAATTTAAGGGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTTGGTAATTGTGAAGAAGGGTGAGAATGATTTACCAGGATTGACTGATGCTGAGAAGCCAAGGATGAGAGGCCCAAAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCCAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTACGCTCCAACGAAAGCGGGCAAGAATTGCTGATAAAAAGAAGAGAATTGCCAAGGCCAAATCGGAGGCAGCAGAGTACCAGAAACTCCTTGCCTCCAGGTTGAAGGAGCAGAGAGACCGCCGCAGTGAGAGTTTGGCTAAGAGGAGATCCAAGCTTTCCAGTGCTGCCAAGGCAGCTGTGTAA 945 0.4868 MIAIGLDIAQLGPTNFVEEPSWGPRVTARVGIKSELKTLLSPYRAHVPSFLIAHREFDAAVAEEDCKMKFNIASPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDAEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSSAAKAAV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01378 314 Hamap 30S ribosomal protein S6e [rps6e]. 11 184 IPR020924 GO:0003735|GO:0005840|GO:0006412
Gma18g01378 314 ProSitePatterns Ribosomal protein S6e signature. 119 130 IPR018282 GO:0003735|GO:0005840|GO:0006412
Gma18g01378 314 PANTHER 40S RIBOSOMAL PROTEIN S6 68 313 - -
Gma18g01378 314 Pfam Ribosomal protein S6e 68 195 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma18g01378 314 PANTHER 40S RIBOSOMAL PROTEIN S6 68 313 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma18g01378 314 Gene3D - 200 301 - -
Gma18g01378 314 MobiDBLite consensus disorder prediction 285 304 - -
Gma18g01378 314 SMART Ribosomal_S6e_2 68 195 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma18g01378 314 Coils Coil 256 283 - -
Gma18g01378 314 MobiDBLite consensus disorder prediction 285 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01378 Gma-Chr18 28648491 28651398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01378 68 309 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.554 3.58e-119 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01378 K02991 - gmx:547746 412.92