Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01369 ATGAAGGAGAAGGTTTTCTTCCTTTGGTGGTTTGGAATGACTCTGAGGCTTTGTTTCTTGCTCGGTGCCAGCTGTTCTGAGAAGACAACATTAAGAAGAGGTTTAAGGGAGACCTTGGCCAAGCAATCGACAACTTCTAAATCTGGGGTCATGGTGAATTCAAACAATCGTGAACAGTTGGTGGTTGACAATGGTATTGTTGCCGTCACCTTTTCAAGACCTGAGGGCTACATCCTTGGAATTTCATATAACGGAATTGACAATATACTTGAAGAAGAAAACGAAGATCAAGATAGAGGGTACTTGGACGTGGTCTGGAATACACCGGGAAAGCCTAGTAACTTTCAGAGAATACACGGGACAATTTTTTCGGTTATAGCAGCTGACGAGAATATGGTGGAGCTTTCATTTTCAAAATCATGGACATCATCCCTGAATGGCTCAAGCGTCCCCATGAACATTGACATAAGATACATTTTGCGAAGTGGTGACTCAGGGTTTTATTCATATGCAATATTTGATCGCCCTGAAGGATTGCCCGCCGTGGAGATTGACCAAATTAGGATTGTTTTCAAACTCAACAAAGACAGGTTCAACTACATGGCTATATCAGATGAAAGGCAGAGAAGCATGCCAACTATGAGAGACAGAGAAACTGGCCAAATTCTAGCTTACCCTGAAGCAGTTCTATTAACCAGACCAATCAACCCAGAATTCAGAGGAGAGGTTGATGATAAATACCAGTACTCCTGTGAGAACAAGGTCAACACTGTTCATGGATGGATCAGTGTTGATGCTGCTGATGCACCACCCGTGGGTTTCTGGATGATAACGCCCAGCAGCGAGTTTCGTAATGCTGGGCCCATCAAGCAGGACCTTACTTCCCATGTTGGCCCCATCACCCTCTCGATGTTTGTGAGTACTCACTATGCTGGCAAGGAGGTAACCATGGCATTTCAAGAAGGGGAGATTTATAAAAAGGTTTTTGGCCCTGTATTTGCCTACGTTAACAATGCTTCAAACGAGGATGACACACTATCCCTCTGGTCAGATGCTGTTCAGCAGCAATCCAAAGAAGTCAGAAGTTGGCCTTACGATTTTCCTAAATCAGTGGATTTCATTCCACCGAATCAAAGGGGAATAGTTTTGGGAAGATTATTAGTCCAAGATAGGTACTTCAGAGGAGGTAGACTTCTATATGCTAACAATTCTTATGTCGGTCTAGCTTTGCCTGGTGATGAAGGATCATGGCAGATAGAAAGCAAGGGCTATCAATTCTGGACTCAAGCCGACACAAAGGGTTTCTTCCTAATAAATAATGTTGTTCCTGGTGACTATAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAGATATAATGCTACAATCACCATCACACCAGGAGGAGTCATCCGATTGGACTCACTTGTGTACGTTCCTCCAAGAAATGGACCAACCATATGGGAAATTGGGTTTCCAGATCGCAAGGCTGCAGAATTCTATGTACCAGAACCTTACCCTACACTCATGAACAAATTATACAACGAACAGCGCAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTACACTGATTTATATCCAAATGATGATCTTGTTTACACTGTTGGTATTAGCAAGTATAGAAAAGATTGGTTTTTTGCTCATGTTACTAGAAGCACAGGAAATAAGACATACCAGCCAACGACATGGCAGATAATATTTGAACATCCAAATCAAATAATAAGAGGAAACTACACATTGCAACTGGCATTGGCATGTACTGCTGATGCTGACTTGCAGGTTCGTGTCAATGACCCTAGCGCTAATCCACCGGACTTTGCAACGGGTAAAATAGGAGGAGACAGTGCCATAGCAAGGCATGGGGTGCATGGTTTGTATAGGTTATTCAGCATTAATGTACCAAGTGATCGATTTGTGAAAGGAACCAACACCATCTATCTAAGGCAGTCAAGAGCCATGAACCCTTTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACGACCTCCATTAACACAGATTTGA 2058 0.4271 MKEKVFFLWWFGMTLRLCFLLGASCSEKTTLRRGLRETLAKQSTTSKSGVMVNSNNREQLVVDNGIVAVTFSRPEGYILGISYNGIDNILEEENEDQDRGYLDVVWNTPGKPSNFQRIHGTIFSVIAADENMVELSFSKSWTSSLNGSSVPMNIDIRYILRSGDSGFYSYAIFDRPEGLPAVEIDQIRIVFKLNKDRFNYMAISDERQRSMPTMRDRETGQILAYPEAVLLTRPINPEFRGEVDDKYQYSCENKVNTVHGWISVDAADAPPVGFWMITPSSEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQEGEIYKKVFGPVFAYVNNASNEDDTLSLWSDAVQQQSKEVRSWPYDFPKSVDFIPPNQRGIVLGRLLVQDRYFRGGRLLYANNSYVGLALPGDEGSWQIESKGYQFWTQADTKGFFLINNVVPGDYNLYAWVPGFIGDYRYNATITITPGGVIRLDSLVYVPPRNGPTIWEIGFPDRKAAEFYVPEPYPTLMNKLYNEQRRDKFRQYGLWERYTDLYPNDDLVYTVGISKYRKDWFFAHVTRSTGNKTYQPTTWQIIFEHPNQIIRGNYTLQLALACTADADLQVRVNDPSANPPDFATGKIGGDSAIARHGVHGLYRLFSINVPSDRFVKGTNTIYLRQSRAMNPFQGVMYDYIRLERPPLTQI 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01369 685 SUPERFAMILY Starch-binding domain-like 375 478 IPR013784 GO:0030246
Gma18g01369 685 CDD RGL4_C 490 678 - -
Gma18g01369 685 Pfam Polysaccharide lyase family 4, domain II 403 473 IPR029413 -
Gma18g01369 685 Gene3D - 485 678 - -
Gma18g01369 685 Pfam Rhamnogalacturonate lyase family 46 243 IPR010325 -
Gma18g01369 685 Gene3D - 43 351 IPR014718 GO:0030246
Gma18g01369 685 CDD RGL4_M 378 478 IPR029413 -
Gma18g01369 685 SUPERFAMILY Galactose mutarotase-like 54 342 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gma18g01369 685 Pfam Polysaccharide lyase family 4, domain III 488 677 IPR029411 -
Gma18g01369 685 SUPERFAMILY Galactose-binding domain-like 485 678 IPR008979 -
Gma18g01369 685 Gene3D - 375 476 - -
Gma18g01369 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 681 - -
Gma18g01369 685 CDD RGL4_N 59 345 - -
Gma18g01369 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01369 Gma-Chr18 27549765 27559104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01369 46 681 Polysaccharide Lyase AT1G09910 55.016 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01369 K18195 - gmx:100776664 1413.28