Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01346 ATGGCTGGTGCCACCAAAAATTGGCTTACGTTTTCGTTGACTCCCATGGAAACGCAGTTCGGTCCATACGACATCACCACTCCCTCTCACTGCTTCAACGACAACAACTTTTATGGGTGGGCGAATTCAAAGGGTGTGATGGATTCACAGAGTGAGACCCAACAACTTGCGGTGCCGAAAATGGAAGATTTTTACTTCGGTGATCACCAGCAAGATCTGAAGGCGATTGTTCCTGGGTTCAAAGCGCTCTCTGGGACCAACTCGGTGGATGACTCGGCCCCCAACAAGACGACGACTCGGGTTGCGCCCGCTGAGTTGACTGGTGCTCACTCAGGCGAGTCTTGCAAAGGATCTGCTTTGTCGTTATGCGATGTTGCTGCAAATGGTTCTGATGATAGTAATGATAATAAGGCCATTGTTGCGGTGGGGTTTGATACTCGGAAGAAGGTTGCTCATACCTTTGGCCAGCGAACTTCAATTTACAGAGGGGTCACAAGGCACCGATGGACGGGCAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGCGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGGTGGTTATGACAAGGAAGATAAGGCTGCGAGGGCTTATGATTTAGCAGCTCTAAAGTACTGGGGACCAAAAGCAACCACTAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAGCATGTAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCTGCTTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCGAGAATTGGCCGGGTTGCGGGAAACAAGGATCTATATTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGTGCCGTAACCAATTTCGAGATGAGGCGATATGACGTCGACGCTATATTGAACAACTCTCTTCCAGTTGGCGGCATAGCAAAACGCTTTAAAGTTTCCCCAGAAACGGAGAACAAAGCTCTTGTCAGCACCATTCAACCACCTCAGAACACAAACGCCAGTAGCAGCATCAATTTCTCAACCATTCAGCCAGTGTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACCTCTTCCACCATTTTAATCCCACCAACGGTGAAAGTAGCACTGCAGAATTTGCTGCAACTATGACCGATGCAATCGCACTCGCTACCCTTCCACCACTGGCAGTTCCTGGGTTCTTCGTATGGCCTCATCAGAACTATTGA 1311 0.4821 MAGATKNWLTFSLTPMETQFGPYDITTPSHCFNDNNFYGWANSKGVMDSQSETQQLAVPKMEDFYFGDHQQDLKAIVPGFKALSGTNSVDDSAPNKTTTRVAPAELTGAHSGESCKGSALSLCDVAANGSDDSNDNKAIVAVGFDTRKKVAHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPKATTNFPISNYTKELEEMKHVGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGASAVTNFEMRRYDVDAILNNSLPVGGIAKRFKVSPETENKALVSTIQPPQNTNASSSINFSTIQPVSSIPYDSAITCYPHNLFHHFNPTNGESSTAEFAATMTDAIALATLPPLAVPGFFVWPHQNY 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01346 436 CDD AP2 159 225 IPR001471 GO:0003700|GO:0006355
Gma18g01346 436 ProSiteProfiles AP2/ERF domain profile. 259 317 IPR001471 GO:0003700|GO:0006355
Gma18g01346 436 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 432 - -
Gma18g01346 436 Gene3D AP2/ERF domain 160 225 IPR036955 GO:0003700|GO:0006355
Gma18g01346 436 Gene3D AP2/ERF domain 259 319 IPR036955 GO:0003700|GO:0006355
Gma18g01346 436 Pfam AP2 domain 259 309 IPR001471 GO:0003700|GO:0006355
Gma18g01346 436 Pfam AP2 domain 160 215 IPR001471 GO:0003700|GO:0006355
Gma18g01346 436 SUPERFAMILY DNA-binding domain 159 225 IPR016177 GO:0003677
Gma18g01346 436 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Gma18g01346 436 PRINTS Ethylene responsive element binding protein signature 299 319 IPR001471 GO:0003700|GO:0006355
Gma18g01346 436 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 82 432 - -
Gma18g01346 436 ProSiteProfiles AP2/ERF domain profile. 160 223 IPR001471 GO:0003700|GO:0006355
Gma18g01346 436 CDD AP2 258 317 IPR001471 GO:0003700|GO:0006355
Gma18g01346 436 SUPERFAMILY DNA-binding domain 258 318 IPR016177 GO:0003677
Gma18g01346 436 SMART rav1_2 160 229 IPR001471 GO:0003700|GO:0006355
Gma18g01346 436 SMART rav1_2 259 323 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01346 Gma-Chr18 25195596 25202057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01346 5 341 AP2-EREBP Transcription Factor Family AT1G51190 54.354 9.78e-121 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gma18g01346 AP2 9.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01346 K09285 - gmx:100795280 883.634