Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01308 ATGAAGCTCTGGTCCACCAATGAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTTATGAGGAAATTGAAAAACGTGAAAAAGAGCAATGACCAAGTGCTTGCTATCAACGAGGAAACAAGCATAATGGCCTTCTATAATAAGGTTGGAAATGTCTTGAGGCAGAGTGTTGCTCACAGCATAAAAGCACCTGTTTCATCCATGCTTAATTGCATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGATCAGTCTCTTAAGGATGCATTTTCTAGCTTTGGAGATGTGGTTGATGATGTTCGTGATAGGGCCTTATTTTATTATAGGCTTTTGCAATACAACATATCAGTGGCAAAGAGTGTGGTTAACCCTCCAAAGCAAGCAGTTTTAGTATTTGCTGATACTCAAAGCAATGAAATCAAATATCGCATATTTGATGAATTTAACAGTTTGTCTGCTGTATACCAAAAGGATGTTCGTGATAGGGTCTTAGTTTATTACAGGCTTCTACAATACAACGTATCAGTGGCAAAGAGTGTGGTTAACCCTCCAAAGCAAGCAATTTCAATATTTGGgttggatcaagtggcctcggaataa 621 0.3768 MKLWSTNEVRAKSKFWYFMRKLKNVKKSNDQVLAINEETSIMAFYNKVGNVLRQSVAHSIKAPVSSMLNCIRCMSSSKLFIGGLSYGVDDQSLKDAFSSFGDVVDDVRDRALFYYRLLQYNISVAKSVVNPPKQAVLVFADTQSNEIKYRIFDEFNSLSAVYQKDVRDRVLVYYRLLQYNVSVAKSVVNPPKQAISIFGLDQVASE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01308 206 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 104 165 IPR026739 GO:0016192
Gma18g01308 206 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 164 200 IPR026739 GO:0016192
Gma18g01308 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 104 IPR000504 GO:0003723
Gma18g01308 206 SUPERFAMILY ARM repeat 105 168 IPR016024 -
Gma18g01308 206 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 1 37 IPR023573 GO:0003735|GO:0005840|GO:0006412
Gma18g01308 206 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 104 165 - -
Gma18g01308 206 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 164 200 - -
Gma18g01308 206 Gene3D - 1 41 - -
Gma18g01308 206 SUPERFAMILY RNA-binding domain, RBD 73 105 IPR035979 GO:0003676
Gma18g01308 206 Gene3D - 70 166 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01308 Gma-Chr18 23369998 23374494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01308 1 37 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 86.486 4.67e-16 72.0