Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01303 ATGGGTCGTCGTAAGATTCAAATTGCAGTGGTGAAAGACCCTAATACAAGGCAAGTAACATTTTCCAAGCGTCGAACAGGTTTGTTCAAAAAGGCGAATGAATTGTCCATCTTGTGTGGAGTAGAAATTGCTATCGTTGTGTTCTCTATTGGAAACAAACCTTACTCTTTTGGGCACCCAAGTGTTGATGTTGTTGTGACTAAATTTCTTCAACATGCGACCAATTCAAATGATGCCCTTGGAAGCAACAATTCTTCAAATGAAGTTGTTGGTGACATGGAAAGGCTGAATCAACAATTATCTGATCTTCAGACCCAAATACTCGAGGAGGAAATTAAGGGTACAAAGCATGATGAGAGACTAAAACAACATGAAGTGACACAAGTCTTTCAATATAAAGAATTGCAAGGTTTGTGTTTAGAGCTCCAACGTAAGGTGAAGGACTATGTTGATGAAATTGAGGTGTCGGAGTGTATGTTGCTTCTTGCACAAGAACCTGTAGTAGGAGTAAGAAAACAAGTAATTACGAAGAAAAGAAGAAAGAATTGA 549 0.3843 MGRRKIQIAVVKDPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSIGNKPYSFGHPSVDVVVTKFLQHATNSNDALGSNNSSNEVVGDMERLNQQLSDLQTQILEEEIKGTKHDERLKQHEVTQVFQYKELQGLCLELQRKVKDYVDEIEVSECMLLLAQEPVVGVRKQVITKKRRKN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01303 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gma18g01303 182 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Gma18g01303 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma18g01303 182 Coils Coil 86 113 - -
Gma18g01303 182 PANTHER MADS BOX PROTEIN 2 173 - -
Gma18g01303 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma18g01303 182 Coils Coil 132 152 - -
Gma18g01303 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma18g01303 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma18g01303 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma18g01303 182 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Gma18g01303 182 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01303 Gma-Chr18 23116997 23117545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01303 1 164 Type I MADS-box Gene Family AT2G34440 38.150 5.07e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma18g01303 SRF-TF 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01303 - - gmx:100784161 356.681