Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01277 ATGCCTTCTTTTTCCTTTCTGTTTCTCTTCCACTGTTCATTCTTCTTACCTTATGCCCTCTCCGACCCAAGAGCCCAGAGAGCCGCGCTGCTATGCACGAACCGCACCGTTTTATCCCTCTCCCGGCGCCAAGTCTTCATCGCGAACTTCCTGGCGGCGATGGACGCGCTGACGCCTCTCACCACCTCGCACGGCCACGGCGCCGTCTCCAACGGCTCCCAAAACGCCACCGTTTACGCCTTCGGCGAGTGCATGAGGGACCTCTCGCGGAACGACTGCAACTTGTGCCTGGCTCAGTGCAAGACGCAGCTCCTCGCCTGCCTCCCTTTCCAGAGAGGGACACGTGGCGGCCGCCTGTTCTTCGACGGCTGCTACCTCAGGTACGATGACTACAACTTCTTCGGCGAAACTCGAAGCGACCAAGATACCACCCTGTGTGGAAATAATAGTAATAACAACAATTCTAACAGTGTTGCTAATAGTGCTACTAATAGTAGTAGCGGTGTTTATAAGGCTAATGTTATGGCCTTGGTTCTGAACCTGAGCGAGTTGGCGCCGAAAAGCGATGGGTTTTTCGTGGGGTCTGTCGAGAGAAAGAACGTGCGTGTTTACGGGTTGGCTCAGTGCTGGGAGTATGTGAATGGCAGTGCTTGTGAGAGATGTTTGGCGGATGCTGTCACGAGGATTGGCTCGTGTGCCACGCAAGAAGCCAGGGTGTTGAATGCTGGTTGTTACTTGAGGTACTCTGCGCAGAAGTTTTATAACAATTCGAGCGTTGTGGCAACCGCTGGAAAACATGGAAAACGGAGACTAGCTAAAATTCTGGCTGCGTCTTCTGCTGCCTTGGCTCTTCTGCTGGTAATTGCAACAGTTGTTTTCTTTATAAGGAAGAATGTGGTGACAAGGAGAAGAGAAAGAAGACAGTTTGGTGCTCTTCTGGACACAGTGAATAAGTCCAAGCTAAATATGCCTTACGAGGTTCTTGAAAAAGCAACAAATTACTTCAATGAGGCCAACAAGCTTGGACAAGGGGGATCAGGTTCTGTTTATAAAGGAGTTATGCCAGATGGAATTACCGTTGCAATAAAAAGGCTTAGCTTCAACACAACGCAATGGGCGGATCATTTCTTCAATGAGGTCAATTTGATTAGTGGCATTCATCACAAAAATCTAGTAAAACTTTTAGGGTGCAGCATCACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTGCCTAACCAGAGCCTCCATGATCACTTTTCTGTAAGAAGGACTTCTCAACCGCTGACTTGGGAAATCAGGCACAAAATTTTATTAGGAATTGCAGAGGGCATGGCCTACCTTCATGAGGAATCACATGTGAGAATCATTCATAGAGACATAAAATTGAGCAACATTCTGCTTGAGGAGGACTTTACACCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCTGAAGACAAGTCTCACATTAGCACAGCCATTGCTGGCACACTGGGGTATATGGCTCCAGAGTATGTTGTTCGTGGGAAGTTGACTGAGAAAGCAGATGTTTACAGTTTTGGAGTTCTTGTTATTGAAATTGTATCTGGCAAAAAAATCAGTGCTTATATTATGAATTCGTCCTCTCTCCTACATACGGTTTGGAGCCTCTATGGATCAAATAGGCTATCTGAAGTTGTTGATCCGACCCTAGAGGGTGCTTTTCCCGCAGAGGGAGCATGCCAACTGCTTCAGATAGGGTTACTTTGTGCACAAGCATCTGCAGAGTTGAGACCATCAATGTCAGTAGTAGTTAAAATGGTTAATAACGATCACGAAATTCCTCAGCCAACACAACCGCCGTTCATGAATTCCGGTAGTTCAGAATTTGGCAAATCTGGTTTACCTGGATATAATTTTCAGCCTGGATCCAACACTCAGTCTTCAGGGAACACCATAAGTGAAAGTGAGATTGAGCCTAGATAA 1971 0.4668 MPSFSFLFLFHCSFFLPYALSDPRAQRAALLCTNRTVLSLSRRQVFIANFLAAMDALTPLTTSHGHGAVSNGSQNATVYAFGECMRDLSRNDCNLCLAQCKTQLLACLPFQRGTRGGRLFFDGCYLRYDDYNFFGETRSDQDTTLCGNNSNNNNSNSVANSATNSSSGVYKANVMALVLNLSELAPKSDGFFVGSVERKNVRVYGLAQCWEYVNGSACERCLADAVTRIGSCATQEARVLNAGCYLRYSAQKFYNNSSVVATAGKHGKRRLAKILAASSAALALLLVIATVVFFIRKNVVTRRRERRQFGALLDTVNKSKLNMPYEVLEKATNYFNEANKLGQGGSGSVYKGVMPDGITVAIKRLSFNTTQWADHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHFSVRRTSQPLTWEIRHKILLGIAEGMAYLHEESHVRIIHRDIKLSNILLEEDFTPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVIEIVSGKKISAYIMNSSSLLHTVWSLYGSNRLSEVVDPTLEGAFPAEGACQLLQIGLLCAQASAELRPSMSVVVKMVNNDHEIPQPTQPPFMNSGSSEFGKSGLPGYNFQPGSNTQSSGNTISESEIEPR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01277 656 ProSiteProfiles Gnk2-homologous domain profile. 25 133 IPR002902 -
Gma18g01277 656 SMART serkin_6 335 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01277 656 Pfam Salt stress response/antifungal 41 131 IPR002902 -
Gma18g01277 656 Pfam Salt stress response/antifungal 162 250 IPR002902 -
Gma18g01277 656 MobiDBLite consensus disorder prediction 610 656 - -
Gma18g01277 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Gma18g01277 656 Gene3D Phosphorylase Kinase; domain 1 295 410 - -
Gma18g01277 656 Pfam Protein kinase domain 336 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01277 656 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 16 642 - -
Gma18g01277 656 SUPERFAMILY Protein kinase-like (PK-like) 321 620 IPR011009 -
Gma18g01277 656 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 642 - -
Gma18g01277 656 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Gma18g01277 656 ProSiteProfiles Gnk2-homologous domain profile. 152 253 IPR002902 -
Gma18g01277 656 Gene3D - 150 253 IPR038408 -
Gma18g01277 656 Gene3D - 28 133 IPR038408 -
Gma18g01277 656 CDD STKc_IRAK 341 605 - -
Gma18g01277 656 ProSiteProfiles Protein kinase domain profile. 335 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01277 656 Gene3D Transferase(Phosphotransferase) domain 1 411 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01277 Gma-Chr18 21937771 21941863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01277 19 500 Receptor kinase-like Gene Family AT1G70530 58.385 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma18g01277 Pkinase 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01277 - - gmx:100787359 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01277 18 21937771 21941863 Gma18g01277 18 21937771 21941863 ECH
Gma18g01277 18 21937771 21941863 Gma17g00826 17 6980631 6984999 ECH