Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01276 ATGGAGAAAACAATCCATCTTGTATATTTCAAATGCCTTGTTTTCCTTCTCATGAAGCAAGTAATAGTGATGGCAGAACCTAGAGCCCGGACTGTCAATATAACATGTAACAATAAGCTAGAGCACAACACCACCATCTTTGTTCCAAATTTTGTTGCAACCATGGAGAAGATCAGTGAACAGATGCGCAATATCGGTTATGGAACAGCAGTTGTAGGTACAGGAGGACCTGACACCAACTACGGGTTGGCTCAGTGCTATGGTGATCTCTCATTACTTGACTGTGTTTTATGTTATGCCGAGGCACGCACGGTTCTTCCCCAATGCTTCCCTTACAATGGCGGTCGCATATACCTTGATGGTTGCTTCATGAGGGCCGAAAACTATAGCTTCTATGATGAGTACATAGGGCCAGGAGACAAGGCTGTTTGTGGAAACACGACAAGGAAGAGCACAAGTTTTCAAGCAGCAGCAAAGAAGGCTGTTTTGAGCGCTGTTCAAGCTGCAGCAAACAATAAAGGGTATGCTAGGAAGGAGGTTTTTGTGGCAGGAACAACAAATGATGCAGCTTATGTTCTGGCTAATTGTTGGAGGAGCTTGGACACAAGGTCTTGTAGAGCTTGTCTTGAGAATGCATCTTCTTCGATATTGGGGTGCTTGCCCTGGTCAGAAGGGAGAGCATTGAACACTGGATGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAACAGGAAAATGGAAGTTCAGGAGGTAATGTACTGGTGATAGTGGTTGCAGTAGTCAGTTCAGTGATTGTTTTGGTGGTTGGAATAGCTATTGTGGTTTATATCCGCAAACACAGATATATTCAAATGAAACGAAGAGGTTCAAATGATGCAGAAAAGTTAGCCAAGAGCCTTCACCACAATAGCTTGAACTTCAAGTATTCTACACTGGAGAAGGCTACTAATTCCTTTGATGAAGCTAATAAGCTTGGACAAGGAGGATTTGGAACCGTTTATAAAGGAGTTCTGGCTGATGGAAGAGAGATTGCTATTAAGAGATTATATTTCAACAACCGACATAGAGCAGCAGATTTCTTCAACGAAGTCAACATAATTAGCAGTGTGGAACACAAAAATCTAGTCAGACTCTTAGGATGCAGTTGTTCAGGACCTGAAAGCCTTCTTATATATGAATATCTACCTAACAGAAGTCTAGATCGCTTCATATTTGATAAAAACAAGGGTAGAGAACTAAACTGGGACAAGAGATATGACATTATCATCGGAACAGCTGAAGGATTGGTTTACCTGCATGAAAACTCCAACATTAGGATAATCCACAGAGATATAAAAGCCAGCAACATCTTATTGGATGCAAAGCTTCGTGCTAAAATTGCTGATTTTGGTTTGGCCAGGTCCTTTCAAGAAGATAAGAGCCACATTAGTACAGCTATCGCTGGAACTTTGGGTTATATGGCTCCAGAGTACCTAGCACACGGTCAGTTAACAGAAAAAGCTGACGTATATAGTTTTGGAGTGTTACTGCTAGAAATAATTACTGGAAGACTGAACAATAGAAGCAAAGCATCAGAATATTCGGACAGTCTAGTTACAATGACATGGAAGCATTTTCAGTCAGGGACTGCGGAACAATTAATCGATCCATGTCTAGTGGTGGATGACAACCATAGAAGCAATGTTAAGAATGAGATTTTGAGAGTGTTGCACATAGGACTTCTATGCACCCAAGAAATCCCTTCCTTAAGACCATCTATGTCAAAGGCACTAAAGATGCTAACAAAGAAGGAGGAGCACTTGGATTTGGAAGCTCCTTCCAATCCACCCTTCATAGATGAAAGTACCATGGAACTCCATGACCAAAATGATGACCCATTTTACCCTCTCAATGCAGAAGATTCATTGGCTACTATGTCTCATAGCTCATTTTATGCCAGGTAA 1950 0.4144 MEKTIHLVYFKCLVFLLMKQVIVMAEPRARTVNITCNNKLEHNTTIFVPNFVATMEKISEQMRNIGYGTAVVGTGGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAENYSFYDEYIGPGDKAVCGNTTRKSTSFQAAAKKAVLSAVQAAANNKGYARKEVFVAGTTNDAAYVLANCWRSLDTRSCRACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEQENGSSGGNVLVIVVAVVSSVIVLVVGIAIVVYIRKHRYIQMKRRGSNDAEKLAKSLHHNSLNFKYSTLEKATNSFDEANKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFFNEVNIISSVEHKNLVRLLGCSCSGPESLLIYEYLPNRSLDRFIFDKNKGRELNWDKRYDIIIGTAEGLVYLHENSNIRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIITGRLNNRSKASEYSDSLVTMTWKHFQSGTAEQLIDPCLVVDDNHRSNVKNEILRVLHIGLLCTQEIPSLRPSMSKALKMLTKKEEHLDLEAPSNPPFIDESTMELHDQNDDPFYPLNAEDSLATMSHSSFYAR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01276 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Gma18g01276 649 Gene3D Transferase(Phosphotransferase) domain 1 397 610 - -
Gma18g01276 649 Gene3D Phosphorylase Kinase; domain 1 282 396 - -
Gma18g01276 649 SUPERFAMILY Protein kinase-like (PK-like) 304 625 IPR011009 -
Gma18g01276 649 Gene3D - 28 131 IPR038408 -
Gma18g01276 649 Gene3D - 141 241 IPR038408 -
Gma18g01276 649 Pfam Protein kinase domain 322 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01276 649 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Gma18g01276 649 Pfam Salt stress response/antifungal 144 238 IPR002902 -
Gma18g01276 649 Pfam Salt stress response/antifungal 43 129 IPR002902 -
Gma18g01276 649 ProSiteProfiles Protein kinase domain profile. 321 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01276 649 ProSiteProfiles Gnk2-homologous domain profile. 29 131 IPR002902 -
Gma18g01276 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 3 630 - -
Gma18g01276 649 CDD STKc_IRAK 327 598 - -
Gma18g01276 649 SMART serkin_6 321 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01276 649 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Gma18g01276 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01276 Gma-Chr18 21878304 21881459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01276 2 649 Receptor kinase-like Gene Family AT1G70520 67.075 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma18g01276 Pkinase 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01276 - - gmx:100818343 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01276 18 21878304 21881459 Gma18g01276 18 21878304 21881459 ECH
Gma01g00263 01 2974001 2977395 Gma18g01276 18 21878304 21881459 PCT
Gma18g01276 18 21878304 21881459 Gma01g00517 01 7356412 7358639 PCT
Gma18g01276 18 21878304 21881459 Gma02g01047 02 11331406 11334348 PCT