Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01275 ATGGAAGGGGAGGGTGATGAAGAAGATTTAGGGGATGAAGTGTGGCAACACTTTCAAGCATCACAGAGGAAACCGCCGTCGATGAAAAATCAAAGAAAAAGAGGAGAGACCATCAAGGATATATTAAAAAGAAGAGTACCAGCAGTAGTGAACAACACCGCCTCAGCCACACTACAAAGACGCAGAAAAGGCGAAGAAGCTAAACGACGCAACGTTATGGAAGACGAAATATACGGCGTGTCATCCACGGCGGAGTACACGGACAGGGCGCTGATGACGCCGGAGAACATATTTCCGGCGGAGTACCACAGCTTCCTAATGTCCTCCGCCGCCCGGACTCCAATGTTCGGATCCGACGAGTTTCTCTCCGCCGCCATCGCCGTCACCGCCGGCAACGAAACCGAACCCTACCCTAACGTCTCCGTCGCACCAGAAATTCAGCACCACCACGACGCCTCTTCTCTCATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGTCTCCTCCAAGCCTACATCGAATGTCAGAAGGTTGGAGCGCCTCCAGAACTCACGTGTTTGTTAGAGGAAATCCGACGAGAAAACGACGTTCGCCAGAGGGACGTTGTTGTTTCCACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCTGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAACAAGATCGAAACTCAGCTTACCGATCTCTGCAGCGGTTCTTCTCTTCCAACTCTTTACGATGATGGGGGTGTGTCTTCAGAAGAAGGTTTTAGTGCTGGAGATGGTGATCCCCAAGATGGCCAATTACGGAGTGAAGATCGAGAGCTGAAGGATAGGCTTTTACGTAGGTTTGGAAGTCACGTTGGATCTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGTAAGCTGCCGAAAGACGCTAGGCAAACACTACTTCAGTGGTGGAATATTCACTACAAATGGCCTTACCCTACGGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGATTAGACCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAGCGCTACTGGAAACCATCTGAGAACATGCCGTTCTCTATGGTGGATGGTCTGACCGGTCGGTTCCTTACTGATGAATGA 1191 0.4929 MEGEGDEEDLGDEVWQHFQASQRKPPSMKNQRKRGETIKDILKRRVPAVVNNTASATLQRRRKGEEAKRRNVMEDEIYGVSSTAEYTDRALMTPENIFPAEYHSFLMSSAARTPMFGSDEFLSAAIAVTAGNETEPYPNVSVAPEIQHHHDASSLIKAKIASHPHYPRLLQAYIECQKVGAPPELTCLLEEIRRENDVRQRDVVVSTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCSGSSLPTLYDDGGVSSEEGFSAGDGDPQDGQLRSEDRELKDRLLRRFGSHVGSLKLEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRYWKPSENMPFSMVDGLTGRFLTDE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01275 396 MobiDBLite consensus disorder prediction 1 35 - -
Gma18g01275 396 ProSiteProfiles ELK domain profile. 293 313 IPR005539 GO:0003677
Gma18g01275 396 SUPERFAMILY Homeodomain-like 314 387 IPR009057 -
Gma18g01275 396 SMART KNOX2_2 205 256 IPR005541 GO:0003677|GO:0005634
Gma18g01275 396 ProSiteProfiles 'Homeobox' domain profile. 313 376 IPR001356 GO:0003677
Gma18g01275 396 Pfam ELK domain 293 314 IPR005539 GO:0003677
Gma18g01275 396 Pfam Homeobox KN domain 333 372 IPR008422 GO:0003677|GO:0006355
Gma18g01275 396 SMART HOX_1 315 380 IPR001356 GO:0003677
Gma18g01275 396 Pfam KNOX2 domain 208 255 IPR005541 GO:0003677|GO:0005634
Gma18g01275 396 Gene3D - 312 382 - -
Gma18g01275 396 Pfam KNOX1 domain 156 197 IPR005540 GO:0003677|GO:0005634
Gma18g01275 396 ProSitePatterns 'Homeobox' domain signature. 351 374 IPR017970 GO:0000981|GO:0006355
Gma18g01275 396 CDD homeodomain 325 377 IPR001356 GO:0003677
Gma18g01275 396 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 386 - -
Gma18g01275 396 SMART ELK_2 293 314 IPR005539 GO:0003677
Gma18g01275 396 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 75 386 - -
Gma18g01275 396 SMART KNOX1_2 154 198 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01275 Gma-Chr18 21857085 21873997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01275 75 396 Homeobox Transcription Factor Family AT1G23380 62.275 2.37e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma18g01275 KNOX2 8.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01275 - - gmx:100786454 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01275 18 21857085 21873997 Gma18g01275 18 21857085 21873997 ECH
Gma01g00265 01 2992550 3000944 Gma18g01275 18 21857085 21873997 PCT
Gma18g01275 18 21857085 21873997 Gma01g00265 01 2992550 3000944 PCT