Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01270 ATGTCAACACTGAACCACCTCTTTGATCTTCCAGAACAGATATGCTACGTACAATGTGGATTCTGTACAACAATACTAATGGTGAGCGTTCCATGCAGCATTTTGTCAACAGTGGTGACCGTGAGATGCGGCCACTGCACAAGCCTCCTCTCTGTCAACATGAAGAAAGCTTCCTTGGTCCCTTTCCACCTTCTAGCTTCCCTTACTCATCTTGAGCCAAAAGAAGGTGCTTCAGAAGATGGTGCAAACAAGAGTTTGAGCAGCTATAATACATCCACAATGACCAATTCGGATTGTGAAGAAGAGAACGTGACCCAAATTTCCGATTTCGTGCATAAACCTCCAGAGAAGAGACAAAGAACACCATCTGCTTATAACCGTTTCATCAAAGAAGAGATTAAAAGGCTTAAGGCTGAAAACCCTAACATGGCCCACAAGGAGGCTTTCAGCACTGCGGCAAAAAATTGGGCCAATTTCCCTCCGTCACCGAGTGATGGAGAAGCAGACAGCTGTAACGGGACAGAGCAACTTGTGGATCTGGACTCCCATCAAGAGCCTCGTGATGCAATTGAGGTTGATAAAGAAGGCCAAGGTTTCCGTGGAAGAAAGGCTCCAAGGAATTCTATCTGGGAAAGGACACCTTTTGAGTGA 651 0.4578 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSILSTVVTVRCGHCTSLLSVNMKKASLVPFHLLASLTHLEPKEGASEDGANKSLSSYNTSTMTNSDCEEENVTQISDFVHKPPEKRQRTPSAYNRFIKEEIKRLKAENPNMAHKEAFSTAAKNWANFPPSPSDGEADSCNGTEQLVDLDSHQEPRDAIEVDKEGQGFRGRKAPRNSIWERTPFE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01270 216 MobiDBLite consensus disorder prediction 165 179 - -
Gma18g01270 216 MobiDBLite consensus disorder prediction 155 216 - -
Gma18g01270 216 MobiDBLite consensus disorder prediction 81 101 - -
Gma18g01270 216 PANTHER PROTEIN YABBY 6-RELATED 1 179 IPR006780 GO:0007275
Gma18g01270 216 MobiDBLite consensus disorder prediction 74 101 - -
Gma18g01270 216 SUPERFAMILY HMG-box 109 161 IPR036910 -
Gma18g01270 216 Gene3D High mobility group box domain 111 205 IPR036910 -
Gma18g01270 216 Pfam YABBY protein 11 161 IPR006780 GO:0007275
Gma18g01270 216 MobiDBLite consensus disorder prediction 180 209 - -
Gma18g01270 216 PANTHER AXIAL REGULATOR YABBY 4 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01270 Gma-Chr18 21149173 21151726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01270 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 57.269 1.58e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gma18g01270 YABBY 1.6e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01270 K25796 - gmx:100807136 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00274 01 3152779 3155078 Gma18g01270 18 21149173 21151726 PCT
Gma18g01270 18 21149173 21151726 Gma01g00274 01 3152779 3155078 PCT