Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01253 ATGCCCAAGTACAACAAAACTTCAGGGAAACGGCAGAGAGGTTTGACATCCCATTGTAGCAATGATGACGATGATAAATCAAAATCGGTCAAGGAGTCTCAGAAGGAAGTTTACCAGGCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATAAAGAAAGGGCTTTTTACTCTGCGGTATCTAGTCCCAAGGATAACCAAGATGGATAGAGCTGCAATTCTTGCCGACGCGGTTGACCATATAAAGGAATTGCAAATGCAAGTAAGAGAACTTAAAGATGAGGTCAGGGAATTGGAAGAACAGGAATGCGAGAAGAACACACCACAATTGAGGATAACAAAAGCCAAAAAACAAGAAGGAACCGGAAGTAACCCTCCTCTTAATCAAAGTTCTTCTGGTTGCACTAAAAAGATGCAAATGGAGGTGCAAGTAGAACTGCATCACATTAGCAAGACAGACCACATTTGA 474 0.4156 MPKYNKTSGKRQRGLTSHCSNDDDDKSKSVKESQKEVYQAKNLVTERNRRNKIKKGLFTLRYLVPRITKMDRAAILADAVDHIKELQMQVRELKDEVRELEEQECEKNTPQLRITKAKKQEGTGSNPPLNQSSSGCTKKMQMEVQVELHHISKTDHI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01253 157 Pfam Helix-loop-helix DNA-binding domain 44 87 IPR011598 GO:0046983
Gma18g01253 157 PANTHER TRANSCRIPTION FACTOR BHLH90 27 155 - -
Gma18g01253 157 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 37 86 IPR011598 GO:0046983
Gma18g01253 157 MobiDBLite consensus disorder prediction 1 37 - -
Gma18g01253 157 Gene3D - 38 118 IPR036638 GO:0046983
Gma18g01253 157 MobiDBLite consensus disorder prediction 116 136 - -
Gma18g01253 157 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 27 155 - -
Gma18g01253 157 Coils Coil 76 106 - -
Gma18g01253 157 MobiDBLite consensus disorder prediction 16 35 - -
Gma18g01253 157 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 103 IPR036638 GO:0046983
Gma18g01253 157 SMART finulus 43 92 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01253 Gma-Chr18 20529694 20530363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01253 17 111 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 48.958 6.19e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma18g01253 HLH 8.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01253 - - gmx:102666322 284.648