Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01252 ATGTCGCCACCACCATCTAAATATTTAAGTCCACCACCATCACCGCAACCGCCACCTCTACCATTACCATCACCATCACTGCGACCACCCTCACCATTGCCGCCATCACCACCACCACCCTCATTGCCACCACCTTCATCGTCACCGCCACCACCGCCACAATCACAATCAGTGCCGTTGCGCAATGGCAATCCTTCTCCTCCTCCTCCTCCTCCTCCTTATTATCCACGTAAACAGTGGCCACCACCGTTGCAACCATTATCGTCGCCACCACAATTCCGTGCTCCACCTCCCCCTGATAGACCTTCTTTGCGGCGTAATGCACCCTCCAATGATTCAACCCAGGGAACCTCTGAGAAGTCACGATCAGGTCACCATAAGCATGGTGTTGCTTCCCATACAAACTCAACAGGTTCTTCTCCCAATCAAACCTCTTCTGGTGATAATTCAGGAAAATATGTTGGTTACACACTCGCTGGGATTTTTGCTGTTGCCTTGGTTGCTGTAGCTGTAGCTCTTGTTTTCGTGTTTAAGAAGAAAAAATCAAGAAGGGATGCCTATACTACACCCTATATGCCACCCTTTAAAATTCATGTAAAATCAGGTGCTAATGGGCATTACTATGTACAGCAGCCTATCCCATCGCCTCCCCTTGCAAACAACTATGGAAATGGGAATATGAGCATGCAACATTTAGGCGCTTCTTTCGACTCAGCTCAGTTCAAAAGTGTTCAGATAGTTTTTACCTATGAAATGGTTATGGAAATGACCAATGCATTTTCTACTCAAAATGTTATTGGGGAAGGAGGGTTTGGGTGTGTTTACAAAGGTTGGCTGCCAGATGGAAAAACAGTTGCAGTAAAGCAGCTTAAGGCTGGCAGTGGACAGGGAGAAAGGGAATTCAAGGCTGAAGTGGAGATCATCAGCCGTGTTCATCATCGACATTTGGTGGCATTAGTTGGTTATTGCATATGTGAGCAGCAAAGAATTCTTATCTATGAGTATGTTCCTAATGGAACACTCCATCATCACTTGCATGAAAGTGGAATGCCGGTGTTAGATTGGGCCAAGAGGCTAAAGATTGCAATAGGTGCTGCAAAGGGCCTAGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATAAAGTCCGCAAACATACTTTTGGATAATGCTTATGAGGCACAGGTTGCTGACTTTGGACTTGCGAGGTTAGCTGATGCTGCCAATACCCATGTATCAACTAGGGTCATGGGAACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACAGACAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACGGGAAGGAAACCCGTTGATCAAACTCAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGACACGTGATTTTAGTGATCTAACAGATCCAAGACTCAAAAAACACTTTGTGGAGAGTGAAATGTTCAGAATGATTGAGGCAGCTGCAGCTTGTGTTCGCCACTCTGCTCTTAGACGGCCTCGTATGGTTCAGGTGGTAAGAGCCTTGGACTGTGGAGACGAAAGTTCTGATATATCTAATGGGATGAAATATGGTCATAGCACGGTTTATGATTCTGGCCAATATGATAAAGCAATTATGCTATTCAGGAGGATGGCCAATGGCACCTTTGATGATTCTGATTTTGATATGGTAAGTAGAGAATACAGTTTGTCAAGAAACACCTCAATGACCTCAAGAGGATCCCAACAAGAATTGATACAGCATAGTTCTAGTGGCGAGTTTGATTCTAGAGATATCAACATGCATAGGAGCAGTATTGAATGA 1878 0.4499 MSPPPSKYLSPPPSPQPPPLPLPSPSLRPPSPLPPSPPPPSLPPPSSSPPPPPQSQSVPLRNGNPSPPPPPPPYYPRKQWPPPLQPLSSPPQFRAPPPPDRPSLRRNAPSNDSTQGTSEKSRSGHHKHGVASHTNSTGSSPNQTSSGDNSGKYVGYTLAGIFAVALVAVAVALVFVFKKKKSRRDAYTTPYMPPFKIHVKSGANGHYYVQQPIPSPPLANNYGNGNMSMQHLGASFDSAQFKSVQIVFTYEMVMEMTNAFSTQNVIGEGGFGCVYKGWLPDGKTVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVALVGYCICEQQRILIYEYVPNGTLHHHLHESGMPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDNAYEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDQTQPLGDESLVEWARPLLLRAIETRDFSDLTDPRLKKHFVESEMFRMIEAAAACVRHSALRRPRMVQVVRALDCGDESSDISNGMKYGHSTVYDSGQYDKAIMLFRRMANGTFDDSDFDMVSREYSLSRNTSMTSRGSQQELIQHSSSGEFDSRDINMHRSSIE 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01252 625 CDD STKc_IRAK 266 534 - -
Gma18g01252 625 Gene3D Transferase(Phosphotransferase) domain 1 336 552 - -
Gma18g01252 625 MobiDBLite consensus disorder prediction 1 148 - -
Gma18g01252 625 MobiDBLite consensus disorder prediction 130 148 - -
Gma18g01252 625 SUPERFAMILY Protein kinase-like (PK-like) 240 533 IPR011009 -
Gma18g01252 625 ProSiteProfiles Protein kinase domain profile. 260 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01252 625 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 3 602 - -
Gma18g01252 625 PRINTS Proline rich extensin signature 38 54 - -
Gma18g01252 625 PRINTS Proline rich extensin signature 14 35 - -
Gma18g01252 625 PRINTS Proline rich extensin signature 2 14 - -
Gma18g01252 625 PRINTS Proline rich extensin signature 55 72 - -
Gma18g01252 625 MobiDBLite consensus disorder prediction 590 625 - -
Gma18g01252 625 Pfam Protein tyrosine and serine/threonine kinase 262 531 IPR001245 GO:0004672|GO:0006468
Gma18g01252 625 MobiDBLite consensus disorder prediction 1 104 - -
Gma18g01252 625 ProSitePatterns Protein kinases ATP-binding region signature. 266 288 IPR017441 GO:0005524
Gma18g01252 625 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 3 602 - -
Gma18g01252 625 SMART serkin_6 260 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01252 625 MobiDBLite consensus disorder prediction 590 612 - -
Gma18g01252 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Gma18g01252 625 Gene3D Phosphorylase Kinase; domain 1 224 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01252 Gma-Chr18 20524009 20529032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01252 148 608 Trihelix Transcription Factor Family AT1G70460 61.587 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gma18g01252 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01252 - - gmx:100797563 1090.49