Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01251 ATGGCAGAATCTTTGAAGGATTGTGTAATTGACAACAATGAATATAAGGTTGGTAATGAAGAAAGCATCCATGTATATTATGCAAATGGCCACGCCAACAATGTATCTGCAAAAATTGCTTCTTTTGGTAATCTTACTCACCCAATTGCTGGGAGAAACAAAGTTCCTTACAAAATTTCTGAAAGTGTTACTCTTCAGACGATGGACAATCAAGCAAATCCACATGAGCAGAAGAATAATACAGTTTCCTTAAGTGGTGTTGATTCCTTGGACAATTTGGTCAATGATAGATTGCAAAGTCAAAACAGCTTTGGAATGTGGGTCGTGGTGACTGGATTTTTTCTTAAGGACTATATGCACCTTTCAAATTCTAATCTATTATGTGTCTGTGGTGATGTTAGTGTTCCTGCAGAAATTGTTCAGGTTGGGGTCTACCGTTGTTGGGTATCACCACACTCTCCAGGATTTGTGAATCTCTACTTCAACATTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGTATATCGCTTGTCATTGGATTTCCGTGATAGGTGTGGATGGACAGCTCTTCATTGGGCAACATATTGTGGAAGGGAGAAAGTGGTTGCAACTCTATTGTCTGCTGGGGCGAAGCCAAATTTGAAAAATCTCTGGTTCAGCACTTCAATGGTTGGAAATATCAGTGGCTCACTGGAAACTAGCACGACTGATCCAGTATATCCTGCAAACCTTATCGAGGACCAACAGAACCTGAAGGATACGTTGATAGCTTACCGAACCCCTGCTGAGGCAGCTTCCCGCATACATGCTGCATTTAGGGAACACTCTCTAAAACTGAGAACTAAGGCTGTATCCTACTCTATAGAGTAG 876 0.4087 MAESLKDCVIDNNEYKVGNEESIHVYYANGHANNVSAKIASFGNLTHPIAGRNKVPYKISESVTLQTMDNQANPHEQKNNTVSLSGVDSLDNLVNDRLQSQNSFGMWVVVTGFFLKDYMHLSNSNLLCVCGDVSVPAEIVQVGVYRCWVSPHSPGFVNLYFNIDGHKPISQVVNFVYRLSLDFRDRCGWTALHWATYCGREKVVATLLSAGAKPNLKNLWFSTSMVGNISGSLETSTTDPVYPANLIEDQQNLKDTLIAYRTPAEAASRIHAAFREHSLKLRTKAVSYSIE 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01251 291 SUPERFAMILY E set domains 105 178 IPR014756 -
Gma18g01251 291 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 108 178 - -
Gma18g01251 291 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 179 216 - -
Gma18g01251 291 SMART ANK_2a 187 216 IPR002110 GO:0005515
Gma18g01251 291 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 108 178 - -
Gma18g01251 291 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 223 289 - -
Gma18g01251 291 Gene3D - 177 271 IPR036770 -
Gma18g01251 291 Pfam Ankyrin repeat 187 218 IPR002110 GO:0005515
Gma18g01251 291 ProSiteProfiles Ankyrin repeat region circular profile. 187 218 - -
Gma18g01251 291 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 223 289 - -
Gma18g01251 291 Gene3D Immunoglobulins 99 176 IPR013783 -
Gma18g01251 291 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 32 108 - -
Gma18g01251 291 SUPERFAMILY Ankyrin repeat 177 219 IPR036770 -
Gma18g01251 291 ProSiteProfiles Ankyrin repeat profile. 187 219 IPR002110 GO:0005515
Gma18g01251 291 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 32 108 - -
Gma18g01251 291 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 179 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01251 Gma-Chr18 20488763 20492606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01251 179 280 CAMTA Transcription Factor Family AT3G16940 45.255 1.50e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01251 K21596 - gmx:100807130 159.073