Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01224 ATGAATTGGGTTCACTCTCAAATCTGCCATAGTACTGATGCTATCAACAACCCTAGTAGTATTTGTTCTTCTTCTTCTTCTGCATCATTGCCTTATAGTTCCGGCTACAAGAAACAACTAGCCTCTCCTCCTCCTCTAGCTTCTTCATCTGGCACCAGAATAAGCCCTGCACTTGTTTTCATCTTTGTCATTCTAGCAATTGTGTTCTTCATCTCTGGTCTCCTTCACTTTCTTGTTAGATTCCTCATAAGGCACAGGTCCTCTTCTTCATCATCAATTTCTCAGTCTAATAGGTACCCTGATGACATGTCTGAATCTGATGATCCTTACCAGAGGCAGCTACAGCAGCTCTTCCATCTCCATGACTCAGGCCTGGATCAGGCCCTCATAGATGCCCTCCCAGTTTTCCTCTACAAAGACATCATAGGGTTAAAGGAGCCATTTGATTGTGCAGTGTGCCTTTGCCAGTTCTCAGAACAAGACATGCTGAGGCTGCTTCCCCTTTGCAACCATGCTTTCCACATTGATTGCATAGACACATGGCTGCTGTCAAATTCAACCTGTCCTCTCTGTAGAGGGAGTCTTTATGATCCAGGCTTTGCCTTTGAAAACCCAGTTTATGACCTTGAGGGTGTGAGGGAAGAAGATGGGGTTTCCGGAAGTGTTCCTGGTGAGGGTGTTTGTGACAACAAGCATGCAGAAAACCACACAATAAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATATTGTTGAGGGGGTGGAAACAGGGGGTGGAGGTGAGAGTAGTACGAGTAATTTGGATGTTAGGAGATGTTATTCAATGGGGTCATTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCCCAATAGAGGTGATGGTGGAGGTGTTAGTGATAGCAGTATGAGACAATTGAAAGGGAGATTGACCAATTATGGAAATTCTTCCACTGATGATGTTGAGGGGAAAAAAATCAATATTACTAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAAGAAGGACAAGGTTTCAATTTCACAAGAAAACCATTTGGGTGGTTCTAATGTCACTGCAGCTCTGCCGTGGGTGAATAGAGCTCTAGGTACATGA 1155 0.4416 MNWVHSQICHSTDAINNPSSICSSSSSASLPYSSGYKKQLASPPPLASSSGTRISPALVFIFVILAIVFFISGLLHFLVRFLIRHRSSSSSSISQSNRYPDDMSESDDPYQRQLQQLFHLHDSGLDQALIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYDPGFAFENPVYDLEGVREEDGVSGSVPGEGVCDNKHAENHTISGKRVFSVRLGKFRSSNIVEGVETGGGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNRGDGGGVSDSSMRQLKGRLTNYGNSSTDDVEGKKINITRKGESFSVSKIWQWSKKDKVSISQENHLGGSNVTAALPWVNRALGT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01224 384 Pfam Ring finger domain 149 192 IPR001841 -
Gma18g01224 384 SUPERFAMILY RING/U-box 129 198 - -
Gma18g01224 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 376 - -
Gma18g01224 384 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 376 - -
Gma18g01224 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 197 IPR013083 -
Gma18g01224 384 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Gma18g01224 384 CDD RING-H2_PA-TM-RING 149 192 - -
Gma18g01224 384 SMART ring_2 150 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01224 Gma-Chr18 19555538 19556692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01224 48 357 C3H Transcription Factor Family AT2G18650 40.118 4.04e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01224 - - gmx:100779678 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00300 01 3444469 3445599 Gma18g01224 18 19555538 19556692 PCT
Gma02g00295 02 3086435 3088451 Gma18g01224 18 19555538 19556692 PCT
Gma18g01224 18 19555538 19556692 Gma01g00300 01 3444469 3445599 PCT
Gma18g01224 18 19555538 19556692 Gma02g00295 02 3086435 3088451 PCT