Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01199 ATGGGTCGAGGGAAGATCAAGATCAAAAGAATCGACAATGCCAGCTGCAGGCAAGTCACGTTCTCAAAGTGGAGGACCGAGTTGTTCAAGAAGGCTCAGGAATTTTCCATAGACTACACGGGAGAACTGCTTCTTCTGGTTCCATTTTGCATATCTCTATCTTCATTTGATTTTCAATTTTCTTCATTTGGGGAAGTGGGTATCTTCTTTTGA 213 0.4225 MGRGKIKIKRIDNASCRQVTFSKWRTELFKKAQEFSIDYTGELLLLVPFCISLSSFDFQFSSFGEVGIFF 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01199 70 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 63 - -
Gma18g01199 70 Gene3D - 13 66 IPR036879 GO:0003677|GO:0046983
Gma18g01199 70 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 1 63 - -
Gma18g01199 70 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Gma18g01199 70 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 37 IPR002100 GO:0003677|GO:0046983
Gma18g01199 70 SMART madsneu2 1 63 IPR002100 GO:0003677|GO:0046983
Gma18g01199 70 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma18g01199 70 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma18g01199 70 SUPERFAMILY SRF-like 1 38 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01199 Gma-Chr18 18627937 18634379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01199 1 64 MADS-box Gene Family AT5G13790 53.125 1.82e-13 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma18g01199 SRF-TF 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01199 - K09264 gmx:547732 65.855