Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01196 ATGATTGTGACTCGTTCTGCTTTGATGCTCCATCTCCAAAACCCACCAATTCGCTACCACTTCTTCTCCCACTTCAGCTATGCTCCCACCTTCCCTACTCTATTCAAACCTCGCCCTTTCTCTCCAACCACTCCACGCCAAGCACAAACCAGAACCTTTGTAAGCGCTGTTGCATCATCATCATCAGCAGCACATGGTTCCAATGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCGTGGAGTTCACTCGGTCTCTCTGATACCATTTCTCGAGCGCTCTCTAACATTGGCCTCAATAGGCCCTCTCTCGTTCAGGCTTCTTCTGTACCGTCTGTGCTGTTAGGGAAGGATGTTATTATTGCTGCGGAGACTGGGAGTGGTAAAACATACAGTTACCTAGTTCCTCTAATTGATAAGCTTAGAGACGCCCAGGAACATTCTCTACATGCTGTGTTGGATCAAAAAGTGACCTCACCACAGAACGTTCTGCTGGTGCTTTGTCCAAATGTGCAACTTTGTGAGCAGGTAGTGAGGATGGCTAACAGTCTCTGTAGAGATGATGGCGAGACAATAGTTAGTGTGGCAGCCATTTGTGGCAAACAGGGATGGCCAATTCGGGAACCTGATGTCATTGTGACGACACCTGCGGCTCTTCTGAATTATGTTGACCTTGACAGAACCCGACGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATTTACTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTTTGATGAAAAACTATTGTCTCGATCAAAAAAATCAGTAGCAGAGTTTCCGATGAAACAGGAATTTTCCTTGTCATCAGAAGATGCTTTTGAAGGTGAAGAGGAACTTCAAACTGAAGCCATCTCAGAAGACGATGACAATGATAAAGAGGATATTGTTGATATTAATAATGAAGCCGAAAATGTTAAACTAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAGCAGTATGTTTTTGTTGCTGCTACACTTCCAGTGAATGGAAAGAAGACAGCTGGAGGGGTATTGAAATATATGTTTCCTGATGCTGAGTGGGTTTGTGGAAACTATCTTCATTGTCACAATCCGAGATTGGAGCAAAAATGGATAGAAGTTATGGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGATTCAGATCTGAAGATTTGGTTAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTACTCCGATCTGGGATTGAATGTTCTCGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAAACCTTAGTTGATTTTCAAGATAAAGGTGGTGTTCTTGTATGTACCGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCGGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACCGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTGCACTGAATCCAACAGGGAGCTTGTTAATGCTGTTCGTCGGGCAGGGGAACTTGATCAACCTGTGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAAAGGGGTACTAACAAAGTCAGAGATTCAGCAACAATTAAAGAGAGCGTTCTAGGATGA 1740 0.4345 MIVTRSALMLHLQNPPIRYHFFSHFSYAPTFPTLFKPRPFSPTTPRQAQTRTFVSAVASSSSAAHGSNGRDTFFAEENVSWSSLGLSDTISRALSNIGLNRPSLVQASSVPSVLLGKDVIIAAETGSGKTYSYLVPLIDKLRDAQEHSLHAVLDQKVTSPQNVLLVLCPNVQLCEQVVRMANSLCRDDGETIVSVAAICGKQGWPIREPDVIVTTPAALLNYVDLDRTRRMEFMRGVKYVVFDEADLLLCGSFQNKVIRLINLLRFDEKLLSRSKKSVAEFPMKQEFSLSSEDAFEGEEELQTEAISEDDDNDKEDIVDINNEAENVKLRDWRRVRKNYERSKQYVFVAATLPVNGKKTAGGVLKYMFPDAEWVCGNYLHCHNPRLEQKWIEVMVDTQVDELIKAVNHRFRSEDLVNAGGIHRTMVFANTVEAVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFQDKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMCTESNRELVNAVRRAGELDQPVETAFSRKRSFRNKLKKRGTNKVRDSATIKESVLG 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01196 579 Pfam DEAD/DEAH box helicase 105 269 IPR011545 GO:0003676|GO:0005524
Gma18g01196 579 Gene3D - 46 367 IPR027417 -
Gma18g01196 579 Pfam Helicase conserved C-terminal domain 422 515 IPR001650 -
Gma18g01196 579 SMART helicmild6 435 515 IPR001650 -
Gma18g01196 579 CDD SF2_C_DEAD 386 524 - -
Gma18g01196 579 Gene3D - 387 579 IPR027417 -
Gma18g01196 579 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Gma18g01196 579 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 551 - -
Gma18g01196 579 CDD DEADc 90 271 - -
Gma18g01196 579 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 563 IPR001650 -
Gma18g01196 579 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 45 551 - -
Gma18g01196 579 SMART ultradead3 98 389 IPR014001 -
Gma18g01196 579 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 370 IPR014001 -
Gma18g01196 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 527 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01196 Gma-Chr18 18517963 18528727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01196 330 542 Eukaryotic Initiation Factors Gene Family AT5G11200 28.279 4.87e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01196 - - gmx:100789323 1125.15