Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01190 ATGAGGCTGTGGTTTCCAGTTCGCGATTTCCGTTCTTTTGTGGTTGAAGGTCTATGCAATTTTATGGCGAGGATTCCTGACAAGATTAAGTCTATTGATGGGTCAAAAGAGACACTTAAGCTTGTTGTCAGAATCACGGATCTTTGGTTTGTTGGGACTCCCAACAAGTCTGAGCAAGCGGAAATGGTTTTTCTTGATTCTGAGGGTGATCAAATTCATGTTGTATGTAAATTGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTCCACTTATGTTATGCATAATTTCAAAGTTGTCAAGAATGATGGTCAATTTAGAGAATTTAGATTTGTTGAATTTGCAAATGTCGTTGCTGGCAATTTCATGGCTGGCCTGTTGGTTGGAAGTTATCCAGCTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTGGAAATTCAGGAATTTAAAGAGAGGCTTTTAGATTTAGGCTTTGAGGTGAGTCCAGTTTTACTACCTGGCGATCAAGCAAGTTCACAAGTTTTAGGGGGAAGCCAGCTATCATCAAAGGATTCGTTTCTTTCAAAAGCTGAAGTCAAATCTATTTCTGAGATCAATGACATTTTTGAGGATGTTGTTTGTGTTACGGTGGGCATTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCTTGCCTTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGCGGATGTGGCAAGGATAATGATCAGCATGTTCTGAGGTATAGAGTTGAAGTAATGGTTACCCAAAACAATGAGAGTAGCAAGTTTTTGCTCTGGGACCCTGAATGTGCTGAATTGATTGGTCAAACAGCTGATGATGTGAATAGGGTCAAGATTGAACAATCTCTATCTGTGACAGCCGACCATGATCCATTTGCAGGATTCCCTTTAACGCCCAAAAAGCGGATGCCATCTGATGAAGTTGATGATGAGTTAGGAAGCTCGCAAATTTCCCTAGCCCAACTATCATCTAACAAATTAACAAGACATTCTGATAAAAGTCAATTTAGCTGA 1089 0.3958 MRLWFPVRDFRSFVVEGLCNFMARIPDKIKSIDGSKETLKLVVRITDLWFVGTPNKSEQAEMVFLDSEGDQIHVVCKLDHLKSWKADLKENSTYVMHNFKVVKNDGQFREFRFVEFANVVAGNFMAGLLVGSYPASVSNSFKASKLLINDPILEIQEFKERLLDLGFEVSPVLLPGDQASSQVLGGSQLSSKDSFLSKAEVKSISEINDIFEDVVCVTVGIISKIVMDNHSWCYPACLQCHRKTDIQTGPFTCGCGKDNDQHVLRYRVEVMVTQNNESSKFLLWDPECAELIGQTADDVNRVKIEQSLSVTADHDPFAGFPLTPKKRMPSDEVDDELGSSQISLAQLSSNKLTRHSDKSQFS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01190 362 SUPERFAMILY Nucleic acid-binding proteins 200 303 IPR012340 -
Gma18g01190 362 SUPERFAMILY Nucleic acid-binding proteins 28 110 IPR012340 -
Gma18g01190 362 CDD RPA1_DBD_A_like 40 109 - -
Gma18g01190 362 Gene3D - 183 336 IPR012340 -
Gma18g01190 362 CDD RPA1_DBD_C 198 303 IPR013955 -
Gma18g01190 362 PANTHER REPLICATION FACTOR A 1, RFA1 32 286 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma18g01190 362 Gene3D - 27 116 IPR012340 -
Gma18g01190 362 Pfam Replication factor-A C terminal domain 221 311 IPR013955 -
Gma18g01190 362 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 32 286 - -
Gma18g01190 362 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01190 Gma-Chr18 18371527 18375343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01190 128 306 Core DNA Replication Machinery Family AT5G08020 28.022 1.90e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01190 - - gsj:114424125 457.603