Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01179 ATGAAGAGGACAAGGGATGATGTTTACATGAGTTCACAACTCAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGACGAGTGGCGGTGGTCAGAAACTAACCACAAATGATGCCTTGGCATATCTCAGGGCAGTAAAGGACATTTTTCAAGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACATCAGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCTCCCCAAAAGAAGCCCGTTGAATTTGCAGAAGCCATAAATTTTGTGGGaaagattaagGCTCGTTTTTATGCCAATGACCGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAATGGAAGCCAAGTCTATCGCTGAGGTTTACAAGGAGGTTGCTGCACTTTTCCAGGACCATGTGGATCTTCTTAGGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAACAGCCAACAATTCTCTCCTTCACGATAGGACAACAATTAGGCAAATGCATGTTGAAAAGAAAGAAAGGAACATAGCTTCACATGGTGATCGTGATCTCGGTGCTGACCATCCTGATCCAGAACTTGACAGATGTTTGATTAGGGCTGATAAGGATCAGAGGAGGCGTGATGAGAAGGAAAAGGACAGTAGAGATTATGATCATGATGGTATATCTCACAAGCGGAAATCTGGTTGTAGGGCTGAAGACTCTGGAGCTGAACCATTGCATGATACTGATGAAAATTTTGGCATGCACCGTATTTCATATGCTTGTGAGGACAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGCTTGGTTACCTTGACAAAGTGAAGGATAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTAAATATCTACAGCAAGGAAATAATTGCCCGACACGAGTTGCAATCATTGGTGGGCAATTTACTGGGAAAACATGCAGATCTTATGGAGGGATTTGATGAATTTTTGGCTCAATGTGAGAAGAATGAAGGATTCCTTGCTGGTCTCCTGAAAAAAAGACACGGACCAAAACCAGTGAAGGTAGAGGACAGGGATCAAGATCGTGATAGGGATGACGGGATGAAAGAAAGGGATCGTGAATGCCGAGAAAGGGACAAAGCAACTGCTAACAAGGATGTTTCAGTTCCTAAGACGTCTCTATATACCAGCAAGGATAAGTATGCAGCGAAACCTATAAGTGAGCTGGATCTTTCTAACTGTGAACAATGCACTCCCAGTTACCGTCTTCTACCGAAAAATTACCCAATACCACCAGCTAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATCACTGGGTTTCTGTTACTTCTGGCAGTGAGGACTATTCCTTTAAACACATGCGCAAAAATCAGTATGAGGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGGGTTGAAGAGCTCTTAGAAAAGGTTAATGCTAATATAATTAAAGGAGACAGTCCAATTTGTATCGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCCTCTTTAGCTTTGCCAGTCATATTAACTCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAATTATCACAAATCACTTGATCACCGTAGTTTCTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGTCTTACTGGCAGAAATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCTTTTATTCCTCACTTGGAATTTGTGTATCCTGATCCAGAGATTCATGAAGATCTGTATCAACTCATAAAATATTCATGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGCTAATAAGAATAATTCTAGCAAAAGTGGCACTGCAATTGATGATGGTGATAGTAGTCCTGTAACAAATCCTAAGAATTTAAACACTAAAAGAAATGAGGATGAGAACTTTCCATCAGAGCAAATAAATTCCTGCAAACAATGGCAAACAAATGGGGATAATAAGGTTAAAGAAGATAATTATCTTGATTCAGAATGCCCGGCACATAAGATTGAAACCTTGGGAAGTACTACACAGCAGGATAAAGTGCATATAAATGCATCCATGCCTGATGAAGTATCAAGAGCCAATAAGCAAGATCATTCCATTGAACGGTTGGTGAATGGTAATGTCTCACCATCCTCGGGTATGGAGCAAATTAGTAGAATAACAAATGTGGATAATGCATCAGGACTTGCTGCTACTCCATCAAGACCTGGTAATATTTCTGGTGCGGGAGGACTTGGTTTACCTTCATTAGAGGGTGCTGATTCTACGAGACCAGTTACATCCACAAATGGGGCCATCATTGAGGACACTAAAGTTCACAGATATCGCGAAGACGCTGGACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACTTTGAAGAGGATGAGTTTGCAGTTTATGGACATGCTGGTTTGGAGGCAGTTCATAAAGGAAAAAATGGTACCATTTGTCGACAATACCAAAATAGACATGGGGAAGAAGTTCGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGTTGAAGAAAGTCCCCATAGATCAATGGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGTACGGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAACATGAGGAGGATGGAGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCAGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGATGGTGCCTCATTGCCATATTCAGAGTGCTTTCTTGTCACTGTAAAGCCTCTGGCAAAACATGTTCCTCCTGTGTTGCATGACAAAGAAAGGACTGCTCGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATCCAATCTGCAAAGGTTAACTCATCATCTGCTGAAAAGAAGTGGAGGGCTTCAAATGATACAGGCTCTAGTGATCAATATGGCAGGTTTATGGATGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACTGAAGAGATAGATAACAAGCTGCTTCAACTATATGCATATGAAAATTCAAGAAAACCTGGAAGATTTGTTGATTTAGTTTATCACGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATGTTCTCCTGCACCTACCCAATTGTCATCTATTCAACTGATGGACTATGGATATGATAAGCCTGAATTGACTGCTGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCTGTTGTCCCTGACAAAATGGAGAAGTCTGGAATTTACCTGAAGAGGAATAAGCGCAAGTATGCTATTAGTGATGAATATTCAAGCCAGACCTTGGATGGACTAGAAATTATCAATGGTCTAGAGTGTAAGATAGTTTGCAATTCATCTAAGGTTTCATACGTTTTAGATACTGAAGACTTTTTACATCGAACAAGAAGAAAAAGGAGAACCTTGCATCAGAGCAGTTCATGCCATGAACAGGCAAAGTCCTCAATCATTTGTTCAAGCAGAGCACAACGGTTCTGCAAATTATTTTCAATTTGA 4146 0.4028 MKRTRDDVYMSSQLKRPMVSSRGEPSGQPQMTSGGGQKLTTNDALAYLRAVKDIFQDKREKYDDFLEVMKDFKAQRIDTSGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAINFVGKIKARFYANDRVYKSFLDILNMYRMEAKSIAEVYKEVAALFQDHVDLLREFTHFLPDTSGTANNSLLHDRTTIRQMHVEKKERNIASHGDRDLGADHPDPELDRCLIRADKDQRRRDEKEKDSRDYDHDGISHKRKSGCRAEDSGAEPLHDTDENFGMHRISYACEDKSSLKSMYSPVLGYLDKVKDKLRNPEDYQEFLKCLNIYSKEIIARHELQSLVGNLLGKHADLMEGFDEFLAQCEKNEGFLAGLLKKRHGPKPVKVEDRDQDRDRDDGMKERDRECRERDKATANKDVSVPKTSLYTSKDKYAAKPISELDLSNCEQCTPSYRLLPKNYPIPPASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKVNANIIKGDSPICIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPFIPHLEFVYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPMLGVPSRPQGPEDTEDVVKANKNNSSKSGTAIDDGDSSPVTNPKNLNTKRNEDENFPSEQINSCKQWQTNGDNKVKEDNYLDSECPAHKIETLGSTTQQDKVHINASMPDEVSRANKQDHSIERLVNGNVSPSSGMEQISRITNVDNASGLAATPSRPGNISGAGGLGLPSLEGADSTRPVTSTNGAIIEDTKVHRYREDAGPFKSEREEGELSPNGDFEEDEFAVYGHAGLEAVHKGKNGTICRQYQNRHGEEVRGEAGGENDADDEVEESPHRSMEDSENASENGDVSGTESADGEECSREHEEDGDHEHDNKAESEGEAEGMADANDVEGDGASLPYSECFLVTVKPLAKHVPPVLHDKERTARVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAEKKWRASNDTGSSDQYGRFMDALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATEEIDNKLLQLYAYENSRKPGRFVDLVYHENARVLLHDENIYRIECSPAPTQLSSIQLMDYGYDKPELTAVSMDPNFSAYLHNDFLSVVPDKMEKSGIYLKRNKRKYAISDEYSSQTLDGLEIINGLECKIVCNSSKVSYVLDTEDFLHRTRRKRRTLHQSSSCHEQAKSSIICSSRAQRFCKLFSI 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01179 1381 Coils Coil 524 544 - -
Gma18g01179 1381 MobiDBLite consensus disorder prediction 747 772 - -
Gma18g01179 1381 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Gma18g01179 1381 MobiDBLite consensus disorder prediction 1 38 - -
Gma18g01179 1381 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Gma18g01179 1381 MobiDBLite consensus disorder prediction 1021 1048 - -
Gma18g01179 1381 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Gma18g01179 1381 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Gma18g01179 1381 SMART hdac_interact2seq4b 455 555 IPR013194 -
Gma18g01179 1381 MobiDBLite consensus disorder prediction 392 431 - -
Gma18g01179 1381 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Gma18g01179 1381 Pfam Paired amphipathic helix repeat 328 372 IPR003822 GO:0006355
Gma18g01179 1381 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Gma18g01179 1381 MobiDBLite consensus disorder prediction 978 1059 - -
Gma18g01179 1381 Pfam C-terminal domain of Sin3a protein 1095 1342 IPR031693 -
Gma18g01179 1381 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Gma18g01179 1381 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Gma18g01179 1381 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1359 - -
Gma18g01179 1381 PANTHER SIN3B-RELATED 1 1359 IPR039774 GO:0003714
Gma18g01179 1381 MobiDBLite consensus disorder prediction 994 1008 - -
Gma18g01179 1381 Gene3D Paired amphipathic helix 305 377 IPR036600 GO:0006355
Gma18g01179 1381 ProSiteProfiles PAH domain profile. 306 375 IPR003822 GO:0006355
Gma18g01179 1381 MobiDBLite consensus disorder prediction 218 288 - -
Gma18g01179 1381 MobiDBLite consensus disorder prediction 392 427 - -
Gma18g01179 1381 MobiDBLite consensus disorder prediction 727 796 - -
Gma18g01179 1381 MobiDBLite consensus disorder prediction 14 38 - -
Gma18g01179 1381 Pfam Sin3 family co-repressor 457 547 IPR013194 -
Gma18g01179 1381 SUPERFAMILY PAH2 domain 310 375 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01179 Gma-Chr18 18095949 18108109 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01179 28 119 WRKY Transcription Factor Family AT4G12020 60.638 1.97e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma18g01179 Sin3a_C 1.3e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01179 K11644 - gmx:100813398 2736.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00347 01 4110764 4123066 Gma18g01179 18 18095949 18108109 PCT
Gma02g00242 02 2436950 2450060 Gma18g01179 18 18095949 18108109 PCT
Gma18g01179 18 18095949 18108109 Gma01g00347 01 4110764 4123066 PCT
Gma18g01179 18 18095949 18108109 Gma02g00242 02 2436950 2450060 PCT