Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01177 ATGGCAGATAGTGCCTTAGCATATCTCTCCACAGTCAAGGATGCATTTAAAGATGATAGAGAAAAATTTGATAAATTTTTGGAACTCATGAAAAATTTCACTGCTGATAGATTCAACCTTGTTAGTGGCATAGAAGAAGTGAAGGAGCTGCTTAAAGGGCATAGAGATCTAATTTTTGGATTTAATGTTTTCTTGCCGAAGGGATTTGAAATCAAACTTCCATTGGAGGATGAACAACCTCCACAGAAGAAGCTTGATGTGTTTGTTGAAGCTAAAAAAATTATGCACAAGATTGAGACTCGGTTCCATGGCCAAGATAATGTCTACAAGGCATTTCTAGCCATATTGAAGATGCACAAAGACGGAAACAGGACTCCCCTGCAGCTTACGAGGAGGACCATCTCCAATAGTGCAACAAATAGTAAAAGGACCAAAACTTCACATGATGATCATGACCACATAGTTGATTATAGATTAGAGAGCGATTTGAGTGAATGGGAAAAGGATTACAGAGATTATTATCAAGATGGTATTCAGAAGCTTCTATCGCTGAAATGGAGATATGGTTGTATGGTTAGACCATTTTGTAATGCTGATGAACATTTTGGTATGCACCCCATGTCATGCACTTGTTCTGATCAAAGTTCTAAGAAAAGTGGTGAAAGGTTTGCTTTCTGTGCAAAAGTCAAGGATAAAGTACAAAATCCTAAGAATTACTTTTCAAAGCATGTGGGTATCTACAGCAAGGAAAAAATTACTCAACAAGAATTGCAGTTATGGGCAACTGATTTCCTAAGAGTATATCCGGATCTCATGAAGGGATTTAATGAATGTGTAACCCAATGTAAGAAGATGAATGAGGAAGTCTATGTTGGCAGTGTGAAGAAAAAATCCTCGAGGGATGAAGAACATGTGCATAAACAAATAAAGGTGGAAAACTGGGACATAGATCAACATGATGGTGATATGATCGACAAGAAGAACTCGGCAAAATCTGTTAAAATCTATCTATCTGTGAGCAGTGCACTCCCAGTTACTATCTTCTACCAAAATTCCAAATCCCATCTTCTAGCCAGAGAACAAAACTTGATGCAGAAGTATTGA 1104 0.3759 MADSALAYLSTVKDAFKDDREKFDKFLELMKNFTADRFNLVSGIEEVKELLKGHRDLIFGFNVFLPKGFEIKLPLEDEQPPQKKLDVFVEAKKIMHKIETRFHGQDNVYKAFLAILKMHKDGNRTPLQLTRRTISNSATNSKRTKTSHDDHDHIVDYRLESDLSEWEKDYRDYYQDGIQKLLSLKWRYGCMVRPFCNADEHFGMHPMSCTCSDQSSKKSGERFAFCAKVKDKVQNPKNYFSKHVGIYSKEKITQQELQLWATDFLRVYPDLMKGFNECVTQCKKMNEEVYVGSVKKKSSRDEEHVHKQIKVENWDIDQHDGDMIDKKNSAKSVKIYLSVSSALPVTIFYQNSKSHLLAREQNLMQKY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01177 367 Pfam Paired amphipathic helix repeat 21 65 IPR003822 GO:0006355
Gma18g01177 367 Gene3D Paired amphipathic helix 4 66 IPR036600 GO:0006355
Gma18g01177 367 PANTHER SIN3A, ISOFORM G 3 301 - -
Gma18g01177 367 SUPERFAMILY PAH2 domain 88 122 IPR036600 GO:0006355
Gma18g01177 367 Gene3D Paired amphipathic helix 213 284 IPR036600 GO:0006355
Gma18g01177 367 ProSiteProfiles PAH domain profile. 1 68 IPR003822 GO:0006355
Gma18g01177 367 PANTHER SIN3B-RELATED 3 301 IPR039774 GO:0003714
Gma18g01177 367 SUPERFAMILY PAH2 domain 3 67 IPR036600 GO:0006355
Gma18g01177 367 Gene3D Paired amphipathic helix 86 159 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01177 Gma-Chr18 18019777 18023162 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01177 5 80 WRKY Transcription Factor Family AT4G12020 42.105 1.57e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma18g01177 PAH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01177 K11644 - gmx:100782878 468.003