Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01172 ATGTGTTCCGCAGAGAAGGACGGGATCATGCTCTTCGGCGTGCGCCTCACCGTATCGGATAATAACCCTACAACCTTAAGGAAGAGCGCCAGCATGAACAATCTCTCCCAATACGACTCTCAACCACCGCACGATCCCAACGCAGGGTACGCCTCAGACGATGTCGTTCATCCCTCCCGTCACACCCGAGAACGCAAACGAGGTGTTCCGTGGACGGAGGAAGAACACAGGTTGTTCCTGTTGGGATTACAGAACGTTGGAAAAGGAAATTGGAGAGGAATTTCTAGAAACTTCGTGATGACTCGAACCCCGACACAGGTTGCTAGTCATGCTCAGAAGTACTTCCTCCGCTGCCACAGGCAGAACCGCCGCCGCCGGAGATCTAGTCTCTTCGACATCACCACCAACTCGGTGATGGAACCGTGGCCGGAGAAGGAAGAGGAACAAGCGGCGGCGCCATCTACTAGGTTGAAACCGGTTCTGCCGGTGCCTCAGTCGTCGAAGATGGCAGAGTTGGACTTGAATGGGAAGTCGCTGTCGCTGAAGCTTTCGGTATCCAAGCCACCTATTTCTAATGAGAATTTTGGCGGTGGTGGGGATAGCATTAGCAGTGTTGCTTGA 621 0.5362 MCSAEKDGIMLFGVRLTVSDNNPTTLRKSASMNNLSQYDSQPPHDPNAGYASDDVVHPSRHTRERKRGVPWTEEEHRLFLLGLQNVGKGNWRGISRNFVMTRTPTQVASHAQKYFLRCHRQNRRRRRSSLFDITTNSVMEPWPEKEEEQAAAPSTRLKPVLPVPQSSKMAELDLNGKSLSLKLSVSKPPISNENFGGGGDSISSVA 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01172 206 ProSiteProfiles SANT domain profile. 66 119 IPR017884 -
Gma18g01172 206 SUPERFAMILY Homeodomain-like 65 118 IPR009057 -
Gma18g01172 206 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Gma18g01172 206 PANTHER TRANSCRIPTION FACTOR KUA1 2 155 - -
Gma18g01172 206 ProSiteProfiles Myb-like domain profile. 63 115 IPR001005 -
Gma18g01172 206 CDD SANT 70 115 IPR001005 -
Gma18g01172 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 119 IPR017930 -
Gma18g01172 206 Gene3D - 69 120 - -
Gma18g01172 206 SMART sant 67 117 IPR001005 -
Gma18g01172 206 MobiDBLite consensus disorder prediction 141 164 - -
Gma18g01172 206 MobiDBLite consensus disorder prediction 186 206 - -
Gma18g01172 206 MobiDBLite consensus disorder prediction 34 68 - -
Gma18g01172 206 PANTHER TRANSCRIPTION FACTOR KUA1 2 155 - -
Gma18g01172 206 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 66 117 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01172 Gma-Chr18 17722571 17725065 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma18g01172 Myb_DNA-binding 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01172 - - gmx:100775434 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00350 01 4196298 4199133 Gma18g01172 18 17722571 17725065 PCT
Gma02g00238 02 2388525 2390918 Gma18g01172 18 17722571 17725065 PCT
Gma18g01172 18 17722571 17725065 Gma01g00350 01 4196298 4199133 PCT
Gma18g01172 18 17722571 17725065 Gma02g00238 02 2388525 2390918 PCT