Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01137 ATGGCTGGTCAGAAGCTTCATGGGGGTTCAAGCATGACACTTTTGCTCCAAAAAGAAAGACTTCCATGCTCCCCTGAACTTATTCAATCTTTTTGTTTTCAAAACTCTGAACCTTCTTTCCAAGGTTCAAAATCCATGGCTAATGTTGTGAACGTCACGCATAGGCCCTTCTTTCAAGGGCCAGAGAAAGAAGAGAACGGCAATGATGCGGATTTTGAGGTGTGCCTCCATCAACCCGGTAAGACAAGGAGGCTCACAAGTGAACAAGTGCAGTTTCTTCAAAGTAACTTCGAGGTGGAAAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAACTTGGCATGCAACCACGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTTGAGACAGACTATGGCATGTTAAAAGCTAGCTATCACGTACTCAAACGGGACTATGACAATCTCCTTCAAGAGAATGACAAGTTAAAGGAAGAGGTTAACTCTCTCAACAGACTGATTCCCAGAGAGCAAGAGGAACAGAATTCTGATGATACCTCTTGTGATACTGTCAACTCACGgcataaagagcataaagagcataaagaTTTAATCATAAACACAGGTTCTGAGAATGGATCCGAAGTGCCACTTCCTGTTAAGGTAATAAACAAACATGAAGATGCTAATTCAGCTAAAAGTGATGTTCTTGATTCGGAGAGCCGACATTTCACTGATGGAAACCAATCCTCATATATGGAGCCTGCAGATTCCTCCCATGCTTTGGAACCAGACCACTCAGATTTCTCGCAAGATGAAGAAGACATCCTCAGCCAAAACATCTTGACCATGCCGTTCTTACCAAAGGTTGAAGATGTCTGCTATGAATATGATGAACCAAATGAAAATTCTTGCAGTTTCCGGTTCCCACTTGAAGATCAAGCCTTCTGCTTTTGGTCATATTGA 975 0.4205 MAGQKLHGGSSMTLLLQKERLPCSPELIQSFCFQNSEPSFQGSKSMANVVNVTHRPFFQGPEKEENGNDADFEVCLHQPGKTRRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLETDYGMLKASYHVLKRDYDNLLQENDKLKEEVNSLNRLIPREQEEQNSDDTSCDTVNSRHKEHKEHKDLIINTGSENGSEVPLPVKVINKHEDANSAKSDVLDSESRHFTDGNQSSYMEPADSSHALEPDHSDFSQDEEDILSQNILTMPFLPKVEDVCYEYDEPNENSCSFRFPLEDQAFCFWSY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01137 324 CDD homeodomain 79 137 IPR001356 GO:0003677
Gma18g01137 324 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Gma18g01137 324 SUPERFAMILY Homeodomain-like 80 147 IPR009057 -
Gma18g01137 324 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Gma18g01137 324 Coils Coil 149 183 - -
Gma18g01137 324 SMART HOX_1 79 140 IPR001356 GO:0003677
Gma18g01137 324 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Gma18g01137 324 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Gma18g01137 324 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 324 - -
Gma18g01137 324 MobiDBLite consensus disorder prediction 175 209 - -
Gma18g01137 324 Pfam Homeobox associated leucine zipper 136 175 IPR003106 GO:0006355|GO:0043565
Gma18g01137 324 MobiDBLite consensus disorder prediction 175 219 - -
Gma18g01137 324 Pfam Homeodomain 83 134 IPR001356 GO:0003677
Gma18g01137 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 324 IPR045224 GO:0003700
Gma18g01137 324 MobiDBLite consensus disorder prediction 232 275 - -
Gma18g01137 324 Gene3D - 75 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01137 Gma-Chr18 16747812 16749613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01137 31 185 Homeobox Transcription Factor Family AT3G01470 51.266 3.12e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma18g01137 Homeodomain 6.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01137 - K09338 gmx:100804328 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01137 18 16747812 16749613 Gma18g01137 18 16747812 16749613 ECH
Gma01g00407 01 5000645 5002260 Gma18g01137 18 16747812 16749613 PCT