Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01120 ATGAAGATTATCCATCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCATTCTTCCAAAATTATGAAAGCTTACTATAGTGATCCAGTAAACAGTCAGAAAAGGAGCATGGCCTTGAAGGGTGTGAAATTCTACtgccaaaactgtggacgtgaagggcacaggagacacaactgtccagaactcgaggatagcttggttGATCGGCGATTCACGTGTAGGATCTGTGGGGATAAAGGCCACAACAGAAGAACATGTAGAAAGTTAAAGATAAGCCTTAGCAATGGGAGAACAATAAAACACCATCGGTGTAAAGTATGCCACCAATTCGGCCATAACCGCAGGACCTGCCCTCAAGCTGTTCCTTCTTTTGTTGTTCCTAGTAAAAGAAGGAATGCAGCCTCTCGAAGACCATACAAATGTAGGTTGTGTAAGAAAGAGGGACATAATATTAGGACATGTCCAAGTAGGACAGTTGTTACTGAACACCCTCGAGATTAA 540 0.3778 MKIIHQDPKLQAQRVAAIKKAKGTVAARKHSSKIMKAYYSDPVNSQKRSMALKGVKFYCQNCGREGHRRHNCPELEDSLVDRRFTCRICGDKGHNRRTCRKLKISLSNGRTIKHHRCKVCHQFGHNRRTCPQAVPSFVVPSKRRNAASRRPYKCRLCKKEGHNIRTCPSRTVVTEHPRD 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01120 179 Pfam Zinc knuckle 150 168 IPR025829 -
Gma18g01120 179 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 1 172 - -
Gma18g01120 179 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 1 172 - -
Gma18g01120 179 SUPERFAMILY Retrovirus zinc finger-like domains 141 171 IPR036875 GO:0003676|GO:0008270
Gma18g01120 179 Gene3D - 54 103 - -
Gma18g01120 179 Gene3D - 111 175 - -
Gma18g01120 179 SUPERFAMILY Retrovirus zinc finger-like domains 56 102 IPR036875 GO:0003676|GO:0008270
Gma18g01120 179 ProSiteProfiles Zinc finger CCHC-type profile. 59 74 IPR001878 GO:0003676|GO:0008270
Gma18g01120 179 Pfam Zinc knuckle 58 74 IPR001878 GO:0003676|GO:0008270
Gma18g01120 179 SMART c2hcfinal6 153 169 IPR001878 GO:0003676|GO:0008270
Gma18g01120 179 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Gma18g01120 179 SMART c2hcfinal6 58 74 IPR001878 GO:0003676|GO:0008270
Gma18g01120 179 SMART c2hcfinal6 85 101 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01120 Gma-Chr18 16332629 16334038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01120 1 172 C2H2 Transcription Factor Family AT5G20220 57.143 1.70e-63 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01120 - - gmx:100800156 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01120 18 16332629 16334038 Gma18g01120 18 16332629 16334038 ECH