Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01119 ATGTCGAATTTGCAGTTACAGATTCACTCTCCTCCACCATCACTCTTATCATATTCATCATCATCACTATCCTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTCTCCTCAAAGTCCCTTCCTTTCAACACTCCTAAACCCTTCTCCCTCAGATGCCGTCACTCTGACCTCTTCGATCAGAACACCTTAGCCTCTACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCCGAATTCATGCCACTCGATTCGGGGGCATACAAAATATCTAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCAGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTTTTTTCCTTATCAGTGGGTGAAATGGGAAGTGTGATTAGTCTTGGTGCAAGGGACTCTTATGAATTTTTTCATGATCCTTTTAAGGGTAAAAGtgatgaaggtaaagtcagaaaaattttgaaggtggagcctcttccagatggttctggacacttctttaacctaaTTTTAACTCTGTTATGGAATTTCCCAAGGTGTTCAAAACAAGCTTGTGAATGTGGATGA 654 0.3945 MSNLQLQIHSPPPSLLSYSSSSLSSSSSLKLFPNHPFSSKSLPFNTPKPFSLRCRHSDLFDQNTLASTPRPTRPSASVGALPPRVYVGYSIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGARDSYEFFHDPFKGKSDEGKVRKILKVEPLPDGSGHFFNLILTLLWNFPRCSKQACECG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01119 217 SUPERFAMILY ssDNA-binding transcriptional regulator domain 83 198 IPR009044 GO:0003677|GO:0006355
Gma18g01119 217 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 5 198 - -
Gma18g01119 217 Pfam Whirly transcription factor 91 199 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma18g01119 217 Gene3D Transcriptional Coactivator Pc4; Chain A 76 201 IPR009044 GO:0003677|GO:0006355
Gma18g01119 217 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 5 198 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01119 Gma-Chr18 16291275 16294547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01119 13 198 Whirly Transcription Factor Family AT1G14410 59.140 2.08e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gma18g01119 Whirly 3.2e-49 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01119 - - gmx:100804480 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01119 18 16291275 16294547 Gma18g01119 18 16291275 16294547 ECH
Gma01g00387 01 4760013 4764436 Gma18g01119 18 16291275 16294547 PCT