Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01110 ATGGGTAATTATCTAGATTCTTCAGCTAAAGTAGAAGCAGCTCACAGTTCCAGAACCCCTTCTGGAATTTCAAAAACTAGACCTTCATCTGTTCCTCCCAACTTATCTATTCTGTCATATAGTGAAGCAAGTGATTTCTCAAATCTTCCCACACCGAGGTCCGAGGGTGAAATCTTGTCTTCCCCAAATCTTAAGGCCTTTACCTTTAACAAGCTAAAGAATGCCACCAGGAACTTTCGCCCCGACAGCCTTCTTGGTGAAGGAGGATTTGGTTATGTTTACAAGGGGTGGATTGATGAACACACACTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAGAAACTCAAGCCTGAAGGGTTACAGGGTCATAAGGAGTGGCTGACTGAAGTGGACTACCTTGGACAACTTCACCATCAGAATCTGGTAAAATTGATTGGATATTGCGTGGAGGGAGAGAATCGGCTGTTGGTATATGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCTCTTTCTTGGTCAGTGAGGATGAAAGTAGCCATTGGTGCTGCCAGAGGACTTTCTTTTCTTCATAATGCCAAATCACAAGTTATATACCGTGATTTTAAAGCATCCAATATCCTACTAGACGCAgagttcaatgctaaactctctgattttggcttagcaaaggctggccctacgggtgatagaactcatgtctctactcaagtcatgggaactgaaggatatgcagcacctgaatatGTTGCAACAGgtcggctgacagctaaaagtgatgtatacagctttggggttgtgttgcttgaactattgtccggtagacgtgcccttgacagatcaaaagccggtgaagagcagaatctagtAGAATGGGCAAAACCATATTTGGGTGACAAAATAAGACTATTTCAGATTATGGACACCAAGTTGGGTAGCCAATACCCACAAAATGGAGCCTACATGGCTGCCACTCTTGCTCTAAAATGCCTTAATAGCGAAGCTAAGGCAAGGCCTCCAATGACAGAGGTTTTAGAAACCCTTGAACAGATTGCAGAGTGCTAA 1098 0.3397 MGNYLDSSAKVEAAHSSRTPSGISKTRPSSVPPNLSILSYSEASDFSNLPTPRSEGEILSSPNLKAFTFNKLKNATRNFRPDSLLGEGGFGYVYKGWIDEHTLTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTEGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRALDRSKAGEEQNLVEWAKPYLGDKIRLFQIMDTKLGSQYPQNGAYMAATLALKCLNSEAKARPPMTEVLETLEQIAEC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01110 365 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Gma18g01110 365 CDD STKc_IRAK 85 362 - -
Gma18g01110 365 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Gma18g01110 365 PANTHER OS01G0588500 PROTEIN-RELATED 10 363 - -
Gma18g01110 365 MobiDBLite consensus disorder prediction 1 32 - -
Gma18g01110 365 Gene3D Transferase(Phosphotransferase) domain 1 165 365 - -
Gma18g01110 365 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01110 365 MobiDBLite consensus disorder prediction 10 32 - -
Gma18g01110 365 SUPERFAMILY Protein kinase-like (PK-like) 54 359 IPR011009 -
Gma18g01110 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gma18g01110 365 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 10 363 - -
Gma18g01110 365 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01110 Gma-Chr18 15983476 15986196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01110 55 359 Glycoside Hydrolase AT3G07070 52.597 8.69e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma18g01110 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01110 - - gmx:100802537 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01110 18 15983476 15986196 Gma18g01110 18 15983476 15986196 ECH