Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01109 ATGGTGCAAGATATGAAGCAGCAGGACAATGGAGAATCTAAGAAGAAGGAGCGTCACATTGTGACTTGGACTCAACAGGAGGATGATATACTAAGAGAGGAGATTGGTATTCATGGAACTGAGAATTGGGCAATTATTGCATCTAAGTTCAAAGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAAAAAGGTGGATGGTCAGCTGAGGAAGACATCCTCTTATGTGAGGCTCAAAAAATATTTGGTAATAGATGGACAGAAATAGCAAAGGTGGTCTCAGGCAGAACGGATAATGCTGTTAAAAATCGTTTCTCCACACTCTGCAGGAAGAAACAAAAATATGAAGCTTTAGCAAAAGAGAACAGCACATCATACATCAATTCAAATAACAAGAGGGTGATGTTCCAACATTGTAATAATATGGATACAACATCAGAATCTGGAGTACCTATTAAGAATTTGAGGAGGACCCATATCCATTATAATGCAGAAAAGATCAAATTTGAGGACCGATTACATTTACGAAATGAAACTCCAATAAATCAGCAACCAAGAGCACCACTTGCAGTCTTGGCTCAAAACTCTCATAACTCAAACAACTTGCCAGACCAGCATCATGTTTGCAATCCCAAGTTTAGCAGTTTGGCCCAAAATTACAAGATTCAAGGAACATTTCTCAAAAAAGATTACCCAAAGATTAGTGCATTGATGCAACAGGCGGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATGCAGGGAACATGGACCAAAGTTTTGAAAACGCATGGAAGgttcttcaagagtttctgaacagaaccaaagaatcagatatacctggacataagattccagatttacagctagtagatcttaaagatgtgattgaggacttgaagagtggtaatgaggaaggccaggCTTGTTGGAGGCAAGTGGACCGTTATGAAGACTCTCCAGGCAGTTCTGGATATAGTACAGGATCAATTCTCCTGTGTGAGTCAGCTGGTGATAATCTGGAGCCTTCATTTCATCAGGATATTGGAACTGAATTGAAGTCTGAACAACTTGAAGATGAGAAAGGAGTAGGTAGAGATGATGGGAAAGTGGTTCTGTCTACTTTAAATGTAGATCAAGATACGTTACCGTGTTTTGAGGAACAGATAAACAATGATGGGATTGTTTCTGCCTCATCAAGATTGGAGTTCAGCTCCCCTCTTCAAGTAACCCCTCTGTTTAGATCCTTGGCAGCAGGAATTCCCAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCTTGAGGAAAACACTAGGAATGGAATCTCCATCCATCAACCCAAGTGCCAACTCATCACAACCGCCACCCTGCAAAAGAGCCCTACTACCTAGTCTATAA 1419 0.3679 MVQDMKQQDNGESKKKERHIVTWTQQEDDILREEIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDILLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKQKYEALAKENSTSYINSNNKRVMFQHCNNMDTTSESGVPIKNLRRTHIHYNAEKIKFEDRLHLRNETPINQQPRAPLAVLAQNSHNSNNLPDQHHVCNPKFSSLAQNYKIQGTFLKKDYPKISALMQQAELLSSLALKVDAGNMDQSFENAWKVLQEFLNRTKESDIPGHKIPDLQLVDLKDVIEDLKSGNEEGQACWRQVDRYEDSPGSSGYSTGSILLCESAGDNLEPSFHQDIGTELKSEQLEDEKGVGRDDGKVVLSTLNVDQDTLPCFEEQINNDGIVSASSRLEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLRKTLGMESPSINPSANSSQPPPCKRALLPSL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01109 472 CDD SANT 22 66 IPR001005 -
Gma18g01109 472 Gene3D - 12 71 - -
Gma18g01109 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Gma18g01109 472 SMART sant 19 68 IPR001005 -
Gma18g01109 472 SMART sant 71 119 IPR001005 -
Gma18g01109 472 PANTHER MYB PROTEIN-RELATED 6 469 - -
Gma18g01109 472 SUPERFAMILY Homeodomain-like 45 125 IPR009057 -
Gma18g01109 472 Gene3D - 74 146 - -
Gma18g01109 472 MobiDBLite consensus disorder prediction 447 464 - -
Gma18g01109 472 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gma18g01109 472 PANTHER TRANSCRIPTION FACTOR MYB88 6 469 - -
Gma18g01109 472 CDD SANT 75 116 IPR001005 -
Gma18g01109 472 Pfam Myb-like DNA-binding domain 23 83 - -
Gma18g01109 472 ProSiteProfiles Myb-like domain profile. 23 66 IPR001005 -
Gma18g01109 472 MobiDBLite consensus disorder prediction 447 472 - -
Gma18g01109 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01109 Gma-Chr18 15951931 15957019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01109 61 472 MYB Transcription Factor Family AT1G14350 52.530 7.58e-130 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma18g01109 Myb_DNA-bind_6 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01109 K09422 - gmx:100807667 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01109 18 15951931 15957019 Gma18g01109 18 15951931 15957019 ECH
Gma18g01109 18 15951931 15957019 Gma01g00404 01 4955569 4961401 PCT