Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01108 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGATGACCATCAACCTCCACCTTCACTCAACTCAATTATAACTTCATGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCAGGGATTGAGCTTGGAGAAGAAGCTAATGCTGAGGAAGATTTGTCTGATGATGGATCACAGGCTGGAGAGAAGAAAAGGAGGCTTAACATGGAACAAGTGAAGACCCTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGTTGGCAAGGGCTCTTGGCTTGCAACCTAGACAAATTGCTATATGGTTCCAGAACAGGAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTATGATCTTCTCAAAAGACAATATGATGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACTGAGATATTGGCACTGAAAAACAGAGAACCAACTGAATCCATCAACCTCAACAAAGAAACTGAGGGATCCAGCAGCAATAGAAGTGAGAACAGCTCAGAGATCAAGTTGGATATCTCAAGAACACCAGCTATTGACAGTCCTCTATCCACTCAGCAGAGCAACAGCAGAACCCTCTTTCCATCTTCTGCTAGACCAACAGGAGTGGCTCAGCTTTTCCAAACCACTCCAAGGCCAGAGATTCAGTGCCAAAAGATTGATCACATGGTCAAAGAAGAGAGCTTAAGCAACATGTTTTGTGGCATTGATGATCAATCTGGCCTTTGGCCTTGGTTGGAGCAGCAACATTTCAATTGA 840 0.4417 MAFFPANFMLQTPHQDDHQPPPSLNSIITSCAPQEYHGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAIKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSEIKLDISRTPAIDSPLSTQQSNSRTLFPSSARPTGVAQLFQTTPRPEIQCQKIDHMVKEESLSNMFCGIDDQSGLWPWLEQQHFN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01108 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 279 - -
Gma18g01108 279 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Gma18g01108 279 CDD homeodomain 75 131 IPR001356 GO:0003677
Gma18g01108 279 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Gma18g01108 279 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Gma18g01108 279 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Gma18g01108 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 279 IPR045224 GO:0003700
Gma18g01108 279 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Gma18g01108 279 Gene3D - 67 136 - -
Gma18g01108 279 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Gma18g01108 279 SMART HOX_1 73 134 IPR001356 GO:0003677
Gma18g01108 279 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Gma18g01108 279 MobiDBLite consensus disorder prediction 175 224 - -
Gma18g01108 279 MobiDBLite consensus disorder prediction 178 224 - -
Gma18g01108 279 MobiDBLite consensus disorder prediction 1 22 - -
Gma18g01108 279 Coils Coil 122 170 - -
Gma18g01108 279 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01108 Gma-Chr18 15831711 15833446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01108 1 279 Homeobox Transcription Factor Family AT1G69780 63.390 5.40e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma18g01108 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01108 K09338 - gmx:100801479 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01108 18 15831711 15833446 Gma18g01108 18 15831711 15833446 ECH