Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01061 atgtcacgcactgatacgatgacgacttcggatcttaatagaactggtcccgtggaaagagacattgagcaggctattactgctttaaaaaaaggggcttacttgctcaagtatggaaggagagggaagcccaagttttgtccctttcggctttccaatgatgaatctattttgatatggttctcagggaaagaagagaagcgccttaaactaactaatgtttctaggattatatctggacaacgcacgCCAATCTTTCAAAGATATCCGCGGCCCGAGAAGGAGTACCAGTCATTTTCTCTCATTTACAATGATAGATCATTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCGTTAATTTCTCGCAGCCATCACCGGAAGTGGAGACCAGAGTCAAGAAGTGACGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCTTTTGGTAGTAACGAAAGCTTGCAAAAGGACAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAAGCATTTTCTGATGTGATTTATTATCCTATTCCTCCAATGGGTTTCTTCCGTCCAGATTCTGCCAGTGGTTCGCTCCACTCTGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGCCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGGGATGTTTTCATTTGGGGGGAAGGCATGGGTGATGGTGTATTGGGTGGTGGGGTTCACCAAGTTGGGAGTAATTTTGGTGTCAAAATGGATTCTCTGTTGCCTAAAGCCTTGGAATCAGCAGTAGTTCTTGATGTGCAGAATATTGCTTGTGGTGGGAAACATGCTGCCTTGGTGACCAAACAAGGTGAAGTTTTTTCCTGGGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCTGATGTTCCTCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCTTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTTACCTCTTCGGGGCAATTATTTACTTTCGGCGATGGTACATTTGGTGCTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCTAGGGAAATAGAGTCCCTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTTGTGACTCTTGTTGAACCTAATTGTCAAGTTGCTTGTGGTCATAGTATGACTGTAGCACTTTCTAGATCAGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAATCCGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTTCACGTGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACTAATGATAGAAACACCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACTGCAGCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAGTCCATGTGTTCTGGCTGCCGTGTGCCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAACTGTGGACTTGTTTTTTGTCATTCATGCAGTAATAAGAAATCTGTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACTACAGAAACTGATTCTTCATCTCAGTCTTCTATGAGCAGAAGAGGAAGTCTTAATCAGGGGTGGTCACTTGAGTTTAATGGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACTTGCCAGGTTTTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGATCTTCAAAGAAAAACAAAAAATTGGAATTCAACAGTAGCCGTGTCTCACCTGCTCCAAATGGTGGTTCCCAGTGGGGAGCAATGAATATTTCTAAATCTTTTAATCCTGGTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACTCCAACCCCAACACTGGGGGGACTTTCATCCCCAAAGATGGTTGTGGATGATGCTAAGAGAATCAATGATAACCTCAGTCAGGAGGTTGTTAAATTAAGATCGCAGGTGGAAAACCTGACTCGGAAAGCCCAGCTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGTTGAAAGAAGCAATAGCAATTGCAAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTCACTGCGCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCATCCAGGAATGTCAGATCGCCACCCTCTCTTGCTTCCTTTGGCTTAAATCCTGGTTCCAATGACCTTACTAATGCTTCCTTCGATCGATTGAATATACAAGCAACAAGCCCAGAATCAGACTCAACTGGATCCACTAACCAGATACTTTCAAATGGATCAAGCACCATCACCAACCGGAGTGCAGGTCACATTAAACACAGTCAATCGGATGCAATTAGCAGAAATGGTAACAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTTACCTCCCTACCAGGAGGAGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCAGAGAATCGGGCAAGAGTATATGAACAATACAACGTGCGCATGATTGACAAGTCGACAATTGGTGTTGGGAGTGAGGACATGGCTCATTGA 3321 0.4026 MSRTDTMTTSDLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESILIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRPESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVIYYPIPPMGFFRPDSASGSLHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGMGDGVLGGGVHQVGSNFGVKMDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEVFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGALGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVTLVEPNCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPIRVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTNDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSNKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQSSMSRRGSLNQGWSLEFNGKDDKLDSRSHNQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPAPNGGSQWGAMNISKSFNPGFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLSSPKMVVDDAKRINDNLSQEVVKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGASRNVRSPPSLASFGLNPGSNDLTNASFDRLNIQATSPESDSTGSTNQILSNGSSTITNRSAGHIKHSQSDAISRNGNKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTIGVGSEDMAH 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01061 1106 MobiDBLite consensus disorder prediction 726 746 - -
Gma18g01061 1106 Pfam Unstructured region between BRX_N and BRX domain 961 1030 - -
Gma18g01061 1106 MobiDBLite consensus disorder prediction 836 864 - -
Gma18g01061 1106 Pfam FYVE zinc finger 657 723 IPR000306 GO:0046872
Gma18g01061 1106 SUPERFAMILY RCC1/BLIP-II 269 658 IPR009091 -
Gma18g01061 1106 Gene3D - 21 137 IPR011993 -
Gma18g01061 1106 MobiDBLite consensus disorder prediction 983 1024 - -
Gma18g01061 1106 Pfam Transcription factor BRX N-terminal domain 919 951 IPR027988 -
Gma18g01061 1106 CDD PH_PLC_plant-like 20 130 - -
Gma18g01061 1106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 730 IPR013083 -
Gma18g01061 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 552 IPR000408 -
Gma18g01061 1106 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Gma18g01061 1106 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 1092 - -
Gma18g01061 1106 MobiDBLite consensus disorder prediction 767 808 - -
Gma18g01061 1106 Pfam Transcription factor regulating root and shoot growth via Pin3 1032 1087 IPR013591 -
Gma18g01061 1106 MobiDBLite consensus disorder prediction 791 808 - -
Gma18g01061 1106 Pfam Pleckstrin homology domain 23 129 IPR001849 -
Gma18g01061 1106 Coils Coil 868 944 - -
Gma18g01061 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 501 549 IPR000408 -
Gma18g01061 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 552 601 IPR000408 -
Gma18g01061 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 437 486 IPR000408 -
Gma18g01061 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 606 653 IPR000408 -
Gma18g01061 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 382 434 IPR000408 -
Gma18g01061 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 331 379 IPR000408 -
Gma18g01061 1106 SMART fyve_4 655 724 IPR000306 GO:0046872
Gma18g01061 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 437 IPR000408 -
Gma18g01061 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 476 486 IPR000408 -
Gma18g01061 1106 SUPERFAMILY PH domain-like 21 129 - -
Gma18g01061 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 438 489 IPR000408 -
Gma18g01061 1106 MobiDBLite consensus disorder prediction 145 174 - -
Gma18g01061 1106 Gene3D - 500 668 IPR009091 -
Gma18g01061 1106 Gene3D - 250 499 IPR009091 -
Gma18g01061 1106 CDD FYVE_like_SF 666 719 - -
Gma18g01061 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 317 327 IPR000408 -
Gma18g01061 1106 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 20 1092 - -
Gma18g01061 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 269 330 IPR000408 -
Gma18g01061 1106 MobiDBLite consensus disorder prediction 136 192 - -
Gma18g01061 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 382 IPR000408 -
Gma18g01061 1106 PRINTS Chromosome condensation regulator RCC1 signature 314 327 IPR000408 -
Gma18g01061 1106 PRINTS Chromosome condensation regulator RCC1 signature 333 349 IPR000408 -
Gma18g01061 1106 PRINTS Chromosome condensation regulator RCC1 signature 383 399 IPR000408 -
Gma18g01061 1106 PRINTS Chromosome condensation regulator RCC1 signature 424 440 IPR000408 -
Gma18g01061 1106 PRINTS Chromosome condensation regulator RCC1 signature 440 454 IPR000408 -
Gma18g01061 1106 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Gma18g01061 1106 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Gma18g01061 1106 SUPERFAMILY FYVE/PHD zinc finger 657 728 IPR011011 -
Gma18g01061 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Gma18g01061 1106 MobiDBLite consensus disorder prediction 983 1033 - -
Gma18g01061 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
Gma18g01061 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 424 434 IPR000408 -
Gma18g01061 1106 ProSiteProfiles BRX domain profile. 1033 1088 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01061 Gma-Chr18 14602852 14619716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01061 928 1097 Major Intrinsic Protein MIP AT1G31880 34.254 4.21e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01061 - - gmx:100791947 2105.1