Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01059 ATGGAAGaagcaactgagttccactctgaagaaaataaattgtctatggagaaaaataagaaaagaaggctcaaaacaccggcccagcttaagggcttggaagatttttataatgataacaaatatcccacggaggaaatgaaatcagaacttgccgatgagttagagttgacagaaaagcaaatatctggatggttttgccacagaagattgaaagataaaaaaatgttgaatgatgaagtatgtgctaatggacgacatgatcgttcaagtggtgtcatccaggatcgtggcagtggtctagtgcaggattcatgcggaagcactaaacatgttgactataggtatctggatcccaaagaggttgagagccatggcctctataaccatggattttcagctgcagatatgatgtatggtcacaataaccatcattatacagaaaatgatagtgcaacagataacacatcatctgagagtagctcctctttacaagaccgattgcttcgtcaaggaaaggatctgtatgatatggagccttcaagtcatcttacacctaatggatctcttccgcctctcaatatcaagggtgcaaataacttgggatataaaccatcaggatatttgaaagtgaagggagatatagaacatgctgctattactgctgttaaaaagcaattaggaaagcattatcgggaagacggtccactacttactgttgaatttgatacaattcctcctgaggcatttgaatgccaaattgctgatctagctaatgaagcatactatgctgcaaatcctgctcttccaaattctccagaagtctctgctgtgaaaaaacaatccagtcttagttctAGATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACATATGGACAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCTTCCAGGTTATAAATCAAAGGCAAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTCCCTGGATTTGAATGCAGACTCTACTGGGGAAGCATCTGCTTATAATAACATAAAAAATCGTAGAAAGGGTACTAAACATGGTTTTGATGGGGTGAGATATGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAATAACCTTGCAGTTAAGCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAATCTGAAGAATGTACAAAGGAGTGAATATGTGAAATCTAAACCTTCCAATTCAGTACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGAGGGCTTAATAAAAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGGTAAAAAAACAATATCGTGATCCAGATGAAGTTAGGGCGCTTACAAATGAAATGATGGTTGCAAAGCGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAATCATCTGTTGCTGAGTTGGAACCAAGAAAAAGTCAAAGATGA 1518 0.1621 MEEATEFHSEENKLSMEKNKKRRLKTPAQLKGLEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKMLNDEVCANGRHDRSSGVIQDRGSGLVQDSCGSTKHVDYRYLDPKEVESHGLYNHGFSAADMMYGHNNHHYTENDSATDNTSSESSSSLQDRLLRQGKDLYDMEPSSHLTPNGSLPPLNIKGANNLGYKPSGYLKVKGDIEHAAITAVKKQLGKHYREDGPLLTVEFDTIPPEAFECQIADLANEAYYAANPALPNSPEVSAVKKQSSLSSRYDSYFTKISSQDSHMDRGDFGSLHDSDFQDKKSFQVINQRQNFQSFTNPLPHKNSSLDLNADSTGEASAYNNIKNRRKGTKHGFDGVRYDSASNPSDHYEENNNLAVKQTDSLLHGYENSNLKNVQRSEYVKSKPSNSVHKSQIYLDTEERRGLNKRMAKEEKFDGDRKVKKQYRDPDEVRALTNEMMVAKRAKVDPLEQYDVKQSSVAELEPRKSQR 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01059 505 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Gma18g01059 505 Gene3D - 9 90 - -
Gma18g01059 505 MobiDBLite consensus disorder prediction 144 165 - -
Gma18g01059 505 MobiDBLite consensus disorder prediction 486 505 - -
Gma18g01059 505 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 504 - -
Gma18g01059 505 CDD homeodomain 20 76 IPR001356 GO:0003677
Gma18g01059 505 SMART HOX_1 18 80 IPR001356 GO:0003677
Gma18g01059 505 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Gma18g01059 505 MobiDBLite consensus disorder prediction 1 27 - -
Gma18g01059 505 MobiDBLite consensus disorder prediction 443 464 - -
Gma18g01059 505 MobiDBLite consensus disorder prediction 143 165 - -
Gma18g01059 505 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 504 - -
Gma18g01059 505 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Gma18g01059 505 MobiDBLite consensus disorder prediction 356 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01059 Gma-Chr18 14561292 14566326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01059 3 504 Homeobox Transcription Factor Family AT4G03250 37.938 5.02e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma18g01059 Homeodomain 9.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01059 - - gmx:100812697 1000.73